Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09160 209 / 4e-63 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72160 195 / 3e-59 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G22530 165 / 1e-46 PATL2 PATELLIN 2 (.1) AT1G72150 159 / 4e-45 PATL1 PATELLIN 1 (.1) AT3G51670 156 / 5e-45 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 155 / 1e-43 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 56 / 8e-09 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 56 / 1e-08 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 49 / 2e-06 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 47 / 8e-06 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001542 [exp] 210 / 9e-65 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 174 / 7e-51 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009453 [exp] 167 / 4e-50 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031752 [exp] 162 / 1e-45 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001539 [exp] 155 / 1e-45 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001269 [exp] 157 / 5e-45 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 153 / 1e-44 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10023378 [exp] 129 / 2e-35 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 127 / 1e-33 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T011100 [exp] 224 / 2e-69 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 224 / 2e-69 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 222 / 1e-68 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 217 / 2e-66 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 208 / 3e-63 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 206 / 2e-62 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 204 / 2e-61 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 189 / 1e-56 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 166 / 2e-48 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 143 / 1e-39 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10025540 pacid=23144993 polypeptide=Lus10025540 locus=Lus10025540.g ID=Lus10025540.BGIv1.0 annot-version=v1.0 ATGGCTCAACCTAAAGAAGAAGTAATAGCTCTCCAACAATTTAAACAACTCATTCTCGACAACAAAAAGAGCTCTTCCGACGAGATCTCCATTTGGGGAG TCAAGCTCCAACCCGATGCCATCAACGACGATAAGACTGATACGATCCTCCTCAAATTCCTACGAGATAGGAACCTCAAGGCCCGTGATGCATTTGACAT GCTCTCCCGCACAATCCTGTGGAGGAAAAAATGCGGCATTGACAAACTACTCCTCAAGGATGAGGACGATGCATATTCAAATGCTCTTCGGAGAGCCTTC TTCGTGTCCGGAAAAGACAAGGAAGGACACCCCGTGTGTTATTATGCGTACGGAGCCTTCCGCGACGAAGAGCTTTACAAAGAGGCCTTCTCTGACGAAG CCAAGATATTGAGGTGGGTGAAATGGAGAATCTTCAACTTGGAAAAGATGGTGAGGAGATTGGACTTCAACGCTAGTGGAGTTTCAACCATCCTTTTCGT CATTGACTTTAAGAACCTTCCGGGCTCCTCCAAGACAGCAATGACGACCGCAAGGCTGTTGACGTTCAAAGTGCATAAGGCCAACTACCCTGGGTTCGTC GAAAGACTGATAGTTATAAATATGTCATGGTCGGACCGGTTAATTGACAAGATCAGCCCATACAGAAACCAAGGAATGTCGACCAACTGCGTATGTGCTG GGCCGTCAAAATCTGGTGACACCCTTTTGAAGTACATTGATGCAGAGCAGATTCCGGCAAGATATAAAGGCCTTATAAAAAAGAGATAG
AA sequence Show only first row Show all	>Lus10025540 pacid=23144993 polypeptide=Lus10025540 locus=Lus10025540.g ID=Lus10025540.BGIv1.0 annot-version=v1.0 MAQPKEEVIALQQFKQLILDNKKSSSDEISIWGVKLQPDAINDDKTDTILLKFLRDRNLKARDAFDMLSRTILWRKKCGIDKLLLKDEDDAYSNALRRAF FVSGKDKEGHPVCYYAYGAFRDEELYKEAFSDEAKILRWVKWRIFNLEKMVRRLDFNASGVSTILFVIDFKNLPGSSKTAMTTARLLTFKVHKANYPGFV ERLIVINMSWSDRLIDKISPYRNQGMSTNCVCAGPSKSGDTLLKYIDAEQIPARYKGLIKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09160			SEC14 cytosolic factor family ...		Lus10025540 [exp]	0	1
AT2G41473			F-box family protein (.1)		Lus10007486 [exp]	3.7	0.6201
					Lus10000292 [exp]	5.2	0.5965
					Lus10032733 [exp]	18.1	0.5427
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	22.7	0.5552
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	33.7	0.5181
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	36.6	0.5425
AT1G32730			unknown protein		Lus10000258 [exp]	38.3	0.5306
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033188 [exp]	41.1	0.5201
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	48.8	0.5343
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	55.4	0.5311

Compare expression of checked genes

Lus10025540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.