Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27060 875 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G10020 692 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20940 296 / 2e-85 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 186 / 1e-48 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26330 182 / 5e-47 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 177 / 3e-45 ERL1 ERECTA-like 1 (.1.2) AT4G34220 176 / 3e-45 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 169 / 1e-42 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 163 / 2e-41 Leucine-rich repeat protein kinase family protein (.1) AT5G06940 164 / 4e-41 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026756 [exp] 1833 / 0 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038544 [exp] 330 / 5e-97 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 320 / 2e-94 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 191 / 2e-49 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10012225 [exp] 183 / 1e-48 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 181 / 4e-47 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 180 / 9e-47 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 176 / 2e-45 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 172 / 5e-44 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197500 [exp] 1120 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083000 [exp] 664 / 0 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G082800 [exp] 650 / 0 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G465800 [exp] 643 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G163700 [exp] 334 / 2e-98 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G159101 [exp] 249 / 1e-76 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097700 [exp] 193 / 2e-50 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G183400 [exp] 191 / 5e-50 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G220100 [exp] 186 / 4e-48 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G126300 [exp] 185 / 4e-48 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025541 pacid=23144975 polypeptide=Lus10025541 locus=Lus10025541.g ID=Lus10025541.BGIv1.0 annot-version=v1.0 ATGAAGAAGGTTTGTCTGGTGTTATTGTTGATGGTGGTAACTACTGTACTGGGACAATCAGATCACCTGACATTGTTGGAGCTCCGGAAGGGCATTGTCG ATGATCCCTCGGTGAAGCAGCTCAAGTCGTGGGATTCGAATTCCTTGGCATCTGATGGATGCCCCAAGGATTGGTATGGAGTTGTTTGTAATGATGGCAA TGTGGCTTCAATTGACCTCAATGGCATGCTTCTTGGTGGCAATTTTAGCTTCCCGGTTATCTCCGGTCTGAAAATGCTGACCAACTTGTCCATTTCGAAC AACCGGTTCGGTGGTACTATCTCGGAAGTTGGTTCCATCCAGACCCTTGAAATCTTGGATCTTTCCAACAATTTGTTTGAGGGAGTTCTACCTTTTGACA TTGTCAATCTCAAGAATTTGAAAATGCTGAATCTTTCTTCCAATAGCTTGCAAGGTATGGTTCCTTCTGGTTTCCGCAATCTCGAGGCTTTAAAGTACTT GGATCTACACAGTAATAACCTCTCTGGGGATGTCATGAATCTGTTTTATGAATTGGGTGACTTGATTCATGTTGACCTCAGCAGCAACCAATTCTTGGGT TCTTTGGATATGGAAATTGGCAGTCCGAATTTTCGGTCATCTGTTCAGTATCTGAATATAAGCCATAACGCGTTGAATGGTGAACTCTTCGCCCATGGAA TGCCGTCTTTTGGAAGTCTAGAGGTTTTTGATGCCACTAATAATCAGTTAGGTGGCGCAATCCCTCCATTCAAACTTATTACTTCTCTTCAAAAGCTTAG GCTTGGAAGCAATCAGTTCTCAGGGACTGTACCTGGAGGTCTTCTGCATCAAAGTCCAATGCTGCTATCTGAGCTCGATCTCAGCCATAACCAGCTTGAA GGTCCAATAGGAGGTATCAGCTCTACAACCCTGAGGAAGCTTAACATGTCTTCAAATAGCCTATCAGGTATCTTACCAGCAGTCATTGCACATTGTGCCG TCATAGATCTGAGCAATAACATGCTTTCGGGAAACGTGTCAAGGATTCAGAACTGGGGGAATGAAGTGGAGGTGATTCACCTGAGTTCAAACTCATTATC AGGATCTCTCCCCAATCAAACCTCTCAATTCTCCAGGCTGAGTTCACTCAAGATATCAAACAACTCAATAGATGGTGAACTACCATCAGTGTTGGTGACA CTCCCGGCACTAAAAGCAATCGATCTCAGCCTTAATTCTCTCAGTGGGTCGATCCACCCTGATTTTTTGGCTTCACCAACATTGACTGATCTTAATCTAT CAGCCAACAATCTCTCCGGGCCACTGCCTATTCGAGGTCCCCGGGGCTCGAACGAAAATGTAAGCTTGACATCTCTGGATCTGTCGCATAATTCACTAGA TGGAATTATACCTCCGGAGATCAGTAAGCTTAAAAAGTTGGTGTATTTGAACTTTTCTCATAACAGTCTGAAAGGCAGCATCCCGTCTGAAATTCCTGAT GGACTGGAAGGATTTGATGTTTCTTCTAACAACCTGTCTGGTGTTGTGCCTGAAAAATTAAGACGCTTCCCCGAATCATCTTTTCTTCCTGGGAATTCAT TATTGGCAATTTCCATCTCTCCAATGTCACCAAAGGGTCCTTCTCAAGGTGTGATACTTCCAGGTCATCGGTCGCGACTAAAACCGGGCATCAAAGCTGC AATCGTTGCCGGGGTTGTTGGTACTTTTACGATTTTGCTACTTTTGTTCGTCGCTTTCCATTCTAAAACTCAGTGGCAGAATATTAGAATGGGAGCTGCT GCCAAAGGAATTGTCAGAAATGAAGGTGGAGTGCAAAGTAGGTCTTCATTGCTTCCTACCACTAGCAAAAATTTGGATGGATCATCTTCTAGCTTCCATC GTGTTGCTCTTCAACAATCCAAGCTACATGACAATGGTGACACTTCATCAGCTGTAGGGAGGCCAATAGATAACCCTCACCAATTCAGAAATGAAGAAGG ATTAGGTTCTCCCATGTCGGTTTGTTCTTCGCAGCCATCGCCTTCCAAAAGCCAGCTTTCTCCCGAGAGTCCTGGCATGCTCCAGGTCTATTCTCCGGAC AAATTGGCTGGGGATCTGCATCTCTTCGATAGCACCTTGGCGTTCACAGCGGAGGAACTTTCTCGTGCCCCGGCTGAAGTAATTGGCAGGAGTTGCCATG GAACACTGTACAAAGCCACACTTGATTCTGGTGCTGTTCTGGCTGTGAAATGGTTGAAGGAGGGAATATCAAAAGGAAGAAAGGAATTCGGAAGAGAAGT CAAGAAACTCGGGACCATCAGGCATCCAAATTTCATTCCTCTGGTTGGTTACTATTGGGGTCCCAAGGATCATGAAAGGATGATCATATATAGCTATTTT GATGCTCATTGTTTGAGTCTTCATTTCCAGGAGCCAAGAAAGCTCCCACCTTTATCACTAAACGAGAGGCTCCGGGTGGCGATTAGTATCAGTGGATGCT TGAGCTTCATCCACAATCAAAAGGGAATACCACATGGCAACCTGAAATCAACAAACATCTTACTGCAACCTCCACATAACGATCCAATGCTCACTGACTA TTGTCTGCACCGGATGATGACATCAGCCGGGACAGCTGAACAAGTTCTCAATGCTGGTGCTCTTGGATACAGACCGCCCGAGTTTGCTAGCTCGAGTAAG CCCTGCCCATCTCTGAGCAGTGATGTGTATGCATTTGGAGTCATTTTGGTCGAGCTCCTCGTAGGTAAAAGCTCTGCAGATATAGTTCCTTGGGAGCACG GAGTGGTTGATCTGACAGATTGGGTTAGATTGTTAGCGGATGAAAACCGGTCCAGCGATTGCTACGATAAGCATATGCTAATCAACACCCATAATTCGGA GGAGGCACTCAGAGTTGCCAACCAAATGCTAGCGGTTGGTCTTAGGTGTGTTTCAGCTGCACCAGAAAGGCCTGACATGAAAGCAGTTTTTGAAGATCTT TCAGCCATAGTGTTGTGA
AA sequence Show only first row Show all	>Lus10025541 pacid=23144975 polypeptide=Lus10025541 locus=Lus10025541.g ID=Lus10025541.BGIv1.0 annot-version=v1.0 MKKVCLVLLLMVVTTVLGQSDHLTLLELRKGIVDDPSVKQLKSWDSNSLASDGCPKDWYGVVCNDGNVASIDLNGMLLGGNFSFPVISGLKMLTNLSISN NRFGGTISEVGSIQTLEILDLSNNLFEGVLPFDIVNLKNLKMLNLSSNSLQGMVPSGFRNLEALKYLDLHSNNLSGDVMNLFYELGDLIHVDLSSNQFLG SLDMEIGSPNFRSSVQYLNISHNALNGELFAHGMPSFGSLEVFDATNNQLGGAIPPFKLITSLQKLRLGSNQFSGTVPGGLLHQSPMLLSELDLSHNQLE GPIGGISSTTLRKLNMSSNSLSGILPAVIAHCAVIDLSNNMLSGNVSRIQNWGNEVEVIHLSSNSLSGSLPNQTSQFSRLSSLKISNNSIDGELPSVLVT LPALKAIDLSLNSLSGSIHPDFLASPTLTDLNLSANNLSGPLPIRGPRGSNENVSLTSLDLSHNSLDGIIPPEISKLKKLVYLNFSHNSLKGSIPSEIPD GLEGFDVSSNNLSGVVPEKLRRFPESSFLPGNSLLAISISPMSPKGPSQGVILPGHRSRLKPGIKAAIVAGVVGTFTILLLLFVAFHSKTQWQNIRMGAA AKGIVRNEGGVQSRSSLLPTTSKNLDGSSSSFHRVALQQSKLHDNGDTSSAVGRPIDNPHQFRNEEGLGSPMSVCSSQPSPSKSQLSPESPGMLQVYSPD KLAGDLHLFDSTLAFTAEELSRAPAEVIGRSCHGTLYKATLDSGAVLAVKWLKEGISKGRKEFGREVKKLGTIRHPNFIPLVGYYWGPKDHERMIIYSYF DAHCLSLHFQEPRKLPPLSLNERLRVAISISGCLSFIHNQKGIPHGNLKSTNILLQPPHNDPMLTDYCLHRMMTSAGTAEQVLNAGALGYRPPEFASSSK PCPSLSSDVYAFGVILVELLVGKSSADIVPWEHGVVDLTDWVRLLADENRSSDCYDKHMLINTHNSEEALRVANQMLAVGLRCVSAAPERPDMKAVFEDL SAIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	0	1
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	1.0	0.9630
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	5.5	0.8822
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	6.8	0.8922
AT3G63430			unknown protein		Lus10018750 [exp]	8.1	0.8845
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	13.0	0.8531
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	14.2	0.8530
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	14.3	0.8677
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	14.6	0.8873
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	14.7	0.8497
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10036393 [exp]	15.4	0.8610

Compare expression of checked genes

Lus10025541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.