Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31710 165 / 3e-48 Copper amine oxidase family protein (.1) AT1G31690 159 / 4e-46 Copper amine oxidase family protein (.1) AT1G31670 153 / 1e-43 Copper amine oxidase family protein (.1) AT4G12270 124 / 7e-34 Copper amine oxidase family protein (.1) AT1G62810 125 / 8e-34 Copper amine oxidase family protein (.1) AT4G12290 124 / 3e-33 Copper amine oxidase family protein (.1) AT4G14940 114 / 5e-30 ATAO1 amine oxidase 1 (.1) AT3G43670 112 / 3e-29 Copper amine oxidase family protein (.1) AT2G42490 64 / 3e-12 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026757 [exp] 274 / 4e-89 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 177 / 2e-52 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 151 / 4e-43 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 144 / 3e-40 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10013355 [exp] 124 / 2e-35 AT1G31710 224 / 2e-68 Copper amine oxidase family protein (.1) Lus10024571 [exp] 126 / 4e-34 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 125 / 9e-34 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 124 / 3e-33 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10032209 [exp] 122 / 2e-32 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 174 / 2e-51 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 160 / 3e-46 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 155 / 2e-44 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 129 / 3e-35 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118200 [exp] 124 / 2e-33 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 123 / 6e-33 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 71 / 8e-15 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 67 / 1e-13 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 66 / 6e-13 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain
Representative CDS sequence Show only first row Show all	>Lus10025542 pacid=23145054 polypeptide=Lus10025542 locus=Lus10025542.g ID=Lus10025542.BGIv1.0 annot-version=v1.0 ATGCTGCCATTAGAAGGGATCACGATGGTGGTTGACTTGGATGAGATGAGGATTGTGGAGTACGGCAATAAGAACGGAGCTCCGATGCCGAAAGCTTCCG GGACGGATTATAGGCTGACGGAGATGGATCCGCCGCTAGGACCCAGGCTTAACGGTGTCGTTTTGCTTCAGCCTGATGGTCCAGGTTTCGCCGTCGATGG ACATTCCGTCAGTTGGGTAGATTGGGTTTCGTTCGATGCCCGGCTCGGTTTGATGATATCCACAACTCAGATTTACGACCCGAAACTCGAATCGTACCGG AGTGTCCTCTACAGAGGGTACATGTCCGAGATATTCGGGCCCTACATGGATCCAAGGGTCAATCACTACTTTAAGTCGTACCTCCACGTGGGCGAGTACG GGTTCGGTCTATGCACGGTTCCATTGGTCCGGGCGTCAATTGTCCGGAAAATGCAGAGTTCATGGACGGGTACATCGGAGGAATCAACGGCTCGCCCGTG A
AA sequence Show only first row Show all	>Lus10025542 pacid=23145054 polypeptide=Lus10025542 locus=Lus10025542.g ID=Lus10025542.BGIv1.0 annot-version=v1.0 MLPLEGITMVVDLDEMRIVEYGNKNGAPMPKASGTDYRLTEMDPPLGPRLNGVVLLQPDGPGFAVDGHSVSWVDWVSFDARLGLMISTTQIYDPKLESYR SVLYRGYMSEIFGPYMDPRVNHYFKSYLHVGEYGFGLCTVPLVRASIVRKMQSSWTGTSEESTARP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31710			Copper amine oxidase family pr...		Lus10025542 [exp]	0	1

Compare expression of checked genes

Lus10025542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.