Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39020 200 / 3e-56 Malectin/receptor-like protein kinase family protein (.1) AT5G39030 195 / 2e-54 Protein kinase superfamily protein (.1) AT5G38250 190 / 4e-54 Protein kinase family protein (.1) AT5G38240 190 / 7e-54 Protein kinase family protein (.1) AT5G38260 191 / 9e-54 Protein kinase superfamily protein (.1) AT1G66920 187 / 8e-53 Protein kinase superfamily protein (.1.2) AT1G67000 190 / 1e-52 Protein kinase superfamily protein (.1) AT1G66910 187 / 2e-52 Protein kinase superfamily protein (.1) AT1G66930 186 / 5e-52 Protein kinase superfamily protein (.1) AT5G38280 186 / 6e-52 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008335 [exp] 453 / 2e-153 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027119 [exp] 380 / 4e-127 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025549 [exp] 352 / 2e-120 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 340 / 2e-114 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 348 / 5e-114 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027085 [exp] 310 / 3e-103 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 298 / 7e-94 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027006 [exp] 281 / 1e-90 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10026760 [exp] 249 / 7e-80 AT1G11915 41 / 4e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 254 / 7e-81 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 247 / 1e-74 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 244 / 1e-73 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 244 / 2e-73 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 236 / 2e-73 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 242 / 6e-73 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009500 [exp] 243 / 1e-72 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 240 / 8e-72 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 239 / 2e-71 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G125200 [exp] 235 / 2e-71 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025544 pacid=23145024 polypeptide=Lus10025544 locus=Lus10025544.g ID=Lus10025544.BGIv1.0 annot-version=v1.0 ATGGACTCTTCTGCAAGATTCTATGTTCAAGCAATCAATTACAACAACGTGACAATCCGGTTGGTGGATGATGGTGTCTTTAGAGGCAACTGCTCCTCGT TGCCCACTACCCCTTTGGATCTGAGAAATTTTTATCTCAGGGATGATCGGTATGCTACCTATAGACCTAGAGTGGACAATTCTTCCTCAGGAATAGAAAG GGAACAACTCAGTAACGTCTGGACTCTGATCAGCTGTGAGAACCCTATGGTCAGTTCTCCAATGTTTATGGCAACAGCTCCTTGCATCGACCGATCCACA GATTCTTCACCTCGTTACTACTATTATGCGGTCCTCCATGGCTACGGAGCTGGTGATGATGTGGATTTATTTAGCTTGGGAAAGAAGTGCAAAGTGGAGA TGATGACTTTGTTACCAACGGATAAGAATTATTCCCATCTCTCATTTCAACAACTCCACCAGCAGTTTGAATATGGTTTTGACCTTTCATGGCACCCCTA CAAATGTACTCACTGCGACGGGTTCTTACAGGGCAATTGCTACATTGACAATCAATACAATGTTCAATGCGACTACGGGCTTATTGTTCACCTGTCAATA AAAGCTGGTGGAATGCCAGTCGCTATTGCATTCCTTATATATAACCTTATATATAAATGGCGAAGAAGACATCTATCAGCATATGATAAAATAGAAAAAT TCATTCAAAACCACAACCTCATGCCAATCAGCAAGGGGAACAATTGGGTACATGGCGCCGTGGCTCGTGGGATCGAATATCTGCATAGCGGGTGTGTCAT GCAGATTCTGCATTTCGACATCAAGCCCCACAACGTTCTTCTTGACGACAACTTTAACCCGAAACTGTCAGACTTCGGGTTGGCTAGGCTGTATTATGCA GGCGATAGAGTTGCAACTCTAACTGCAGCAAGGGGAACAATTGGGTACATGGCGCCGGAGCTGTTCTACAGGAACATCGGAAGCGTATCTTACAAAGCTG ATGTCTATAGTTTTGGAATGTTACTGTTGGACATGGCAGAGAAAAGGAATAACTTGAATGTTGCAACAGGTCGTTCGAGTCAAGTTTACTTCCCGTTCTG GGTTCATGATCAGGTTGTGTCGTCCACACAAGGAACTCCTATTGTAGCTGGAGAAGATGTAACGGAAGAGGAGAATGAGATTGCAAAGAAGATGGTGATT GTAGGGTTGTGGTGCATCCAGACGAATCCTGACAACCGTCCTCCGATGAACAAAGTGGTGGACATGCTTGAAGGAGATCTGGAAAGCTTACCTCTGCCTC CAAGACCTTCCCTGTATACAGGGGAATCTGTAAGAAGCAACGAACAAGGTGCATCGTCGTCTTTTGTGTCATCATCGCAGTATACACAATCAATCGGTCA AAGCAGCCGGTGA
AA sequence Show only first row Show all	>Lus10025544 pacid=23145024 polypeptide=Lus10025544 locus=Lus10025544.g ID=Lus10025544.BGIv1.0 annot-version=v1.0 MDSSARFYVQAINYNNVTIRLVDDGVFRGNCSSLPTTPLDLRNFYLRDDRYATYRPRVDNSSSGIEREQLSNVWTLISCENPMVSSPMFMATAPCIDRST DSSPRYYYYAVLHGYGAGDDVDLFSLGKKCKVEMMTLLPTDKNYSHLSFQQLHQQFEYGFDLSWHPYKCTHCDGFLQGNCYIDNQYNVQCDYGLIVHLSI KAGGMPVAIAFLIYNLIYKWRRRHLSAYDKIEKFIQNHNLMPISKGNNWVHGAVARGIEYLHSGCVMQILHFDIKPHNVLLDDNFNPKLSDFGLARLYYA GDRVATLTAARGTIGYMAPELFYRNIGSVSYKADVYSFGMLLLDMAEKRNNLNVATGRSSQVYFPFWVHDQVVSSTQGTPIVAGEDVTEEENEIAKKMVI VGLWCIQTNPDNRPPMNKVVDMLEGDLESLPLPPRPSLYTGESVRSNEQGASSSFVSSSQYTQSIGQSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	0	1
AT1G60783			unknown protein		Lus10026693 [exp]	1.7	0.9274
AT5G61820			unknown protein		Lus10033851 [exp]	2.2	0.9158
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	2.8	0.9120
					Lus10025225 [exp]	4.6	0.9234
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	5.1	0.9267
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	5.5	0.9028
AT5G05180			unknown protein		Lus10034251 [exp]	6.0	0.9163
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	6.5	0.9154
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	10.9	0.9145
AT1G60783			unknown protein		Lus10004622 [exp]	11.0	0.9021

Compare expression of checked genes

Lus10025544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.