Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39020 293 / 9e-93 Malectin/receptor-like protein kinase family protein (.1) AT5G39030 293 / 1e-92 Protein kinase superfamily protein (.1) AT1G70250 288 / 5e-91 receptor serine/threonine kinase, putative (.1) AT5G38260 285 / 5e-91 Protein kinase superfamily protein (.1) AT5G38280 284 / 1e-90 PR5K PR5-like receptor kinase (.1) AT1G66930 281 / 3e-89 Protein kinase superfamily protein (.1) AT1G66910 280 / 4e-89 Protein kinase superfamily protein (.1) AT1G66920 278 / 1e-88 Protein kinase superfamily protein (.1.2) AT1G67000 283 / 2e-88 Protein kinase superfamily protein (.1) AT4G18250 281 / 7e-88 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022359 [exp] 541 / 0 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 538 / 0 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 436 / 5e-155 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 445 / 3e-153 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 414 / 5e-143 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027116 [exp] 370 / 2e-129 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1) Lus10025549 [exp] 358 / 5e-125 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10014924 [exp] 362 / 1e-120 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10027119 [exp] 358 / 1e-120 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 410 / 2e-144 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 393 / 6e-137 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 394 / 2e-133 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125200 [exp] 389 / 3e-133 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 392 / 2e-132 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 390 / 6e-132 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 391 / 1e-131 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.007G125800 [exp] 389 / 4e-131 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.017G009600 [exp] 390 / 7e-131 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G008800 [exp] 387 / 5e-130 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025545 pacid=23145135 polypeptide=Lus10025545 locus=Lus10025545.g ID=Lus10025545.BGIv1.0 annot-version=v1.0 ATGCCAATTAGGTACTCTTACTCAAACATCAAGAAGTTCACCGACGGCTTCAAGTACAAGCTAGGTGAAGGTGGTTTTGGTGCCGTTTACAAGGGCAAGC TCCGAAGCGGCAGTTTTGCAGCTGTGAAAATGCTTGGAAAGTCTACAGCTGGCGGAGTCGATGACTTCATTAACGAAGTTGCTACCATTGGAACGATTCA CCATGCGAATGTGGTTAAACTTATCGGCTTCTGTTCTGAAGGATCGAAGCGTGCTCTTGTTTACGAGTTCATGCCAAATGGTTCCCTTGACAAGTACATC TTTCGCAAGAAACGAGGACGCAGATCTTTGAGCTTACAACAACTCTTTCGCAAGCAACAAGGACGTGGAACTTTGAGCTTGGAACAACTGTATCGAATTT CTATCGGAGTGGCTCGTGGGATTCAATATCTTCATAGCGGGTGCGCCATGCAGATTCTGCATTTCGACATCAAGCCCCACAATGTTCTTCTTGACAAAAA CTTTAACCCAAAATTGTCAGACTTTGGATTGGCTAGGCTGTATTATGCAGGTGATCAAGTTGCAACTCTAACTGCGGCAAGGGGAACCATCGGGTACATG GCACCAGAGCTGTTCTACAGGAACATTGGAAACATCTCTTACAAAGCCGATGTCTATAGCTTTGGGATGTTACTCTTGGACATGGCAGAGAAAAAAAATA ACTTGAATGCAACAACAGGTCGTTCAAGTCAAGTTTACTTCCCGTTCTGGGTTCATGATCAGGTTGTGACGTCCGCACAAGGAACTCCTACTCTAGCTGG AGATGATGTAACAGAAGAGGAGAATGAGATTGTGACAAAGATGGTGATTGTAGGGTTGTGGTGCATCCAAACAAATCCTAATAGCCGTCCTCCGATGAAC AAAGTGGTGGAGATGCTTGAAGGAGAGCTGGAAAACTTACCACTGCCTCCTAGACCTGTGTTGTATGCTGGAGAATCTATAAGAAATATCAAAGAAGGAT AA
AA sequence Show only first row Show all	>Lus10025545 pacid=23145135 polypeptide=Lus10025545 locus=Lus10025545.g ID=Lus10025545.BGIv1.0 annot-version=v1.0 MPIRYSYSNIKKFTDGFKYKLGEGGFGAVYKGKLRSGSFAAVKMLGKSTAGGVDDFINEVATIGTIHHANVVKLIGFCSEGSKRALVYEFMPNGSLDKYI FRKKRGRRSLSLQQLFRKQQGRGTLSLEQLYRISIGVARGIQYLHSGCAMQILHFDIKPHNVLLDKNFNPKLSDFGLARLYYAGDQVATLTAARGTIGYM APELFYRNIGNISYKADVYSFGMLLLDMAEKKNNLNATTGRSSQVYFPFWVHDQVVTSAQGTPTLAGDDVTEEENEIVTKMVIVGLWCIQTNPNSRPPMN KVVEMLEGELENLPLPPRPVLYAGESIRNIKEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	0	1
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	2.0	0.9437
AT2G39440			unknown protein		Lus10018300 [exp]	2.4	0.9519
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	3.2	0.9486
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	3.5	0.9411
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	3.9	0.9467
					Lus10010378 [exp]	7.7	0.9428
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	8.5	0.9394
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	8.5	0.9162
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	8.8	0.9154
					Lus10034389 [exp]	8.9	0.9299

Compare expression of checked genes

Lus10025545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.