Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46495 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026760 [exp] 261 / 5e-88 AT1G11915 41 / 4e-04 unknown protein Lus10022359 [exp] 252 / 1e-80 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10022368 [exp] 256 / 6e-79 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008362 [exp] 193 / 2e-58 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027117 [exp] 184 / 7e-58 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10027119 [exp] 185 / 3e-55 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025554 [exp] 172 / 5e-51 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 171 / 3e-49 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025544 [exp] 147 / 1e-41 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126100 [exp] 101 / 1e-24 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G141125 [exp] 98 / 2e-23 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 97 / 5e-23 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 97 / 7e-23 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009100 [exp] 94 / 5e-22 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 94 / 6e-22 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 91 / 4e-21 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 91 / 1e-20 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 90 / 2e-20 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 89 / 3e-20 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025546 pacid=23144957 polypeptide=Lus10025546 locus=Lus10025546.g ID=Lus10025546.BGIv1.0 annot-version=v1.0 ATGATCTCATCACCATTTATTTTGCTGCTGCTGCTGCAAACACTACTACTTCTGCAGAATTGCCAAGCTATTGGCAATGGTGGGAACTGTGAACCTTCGT CCTGTGGGAACATCCCCATCATTAAGCACCCTTTTCGACTCACCGCTGATCCCCAGATATGCGAAGATTACAACTATAACCTGTCATGTGAGAGCAATAC AACAATATTGTATCTGATGGACTCTTCTGCAAGATTCTATGTTCAAGCAATCGACTACAACAACTTGACAATCCGGTTGGTGGATGCTGGTGTGGTTAGA GGCAACTGTTCCTCGTTTCCCAAGACCCCTTTGTCTCTGGGAGGATATGATCCGTATGCTACCGGAAGATATAGAGGGACTTCACAAATAATTGAACATC TTGATGAAGTCTTGACTCTGATCAGCTGTGAGAATCCTATGGTCAATTCTGCAATGTTTATGGAAATAGCTCTTTGCATCGACCGATCCAGAGATTCTTC ACCTCATTACTACTATTATTCTGTTATTGATGGCGACCGTGGTGGTGGTGGTGGCGGTGTGGATTTATTTAGCTCGGGAAAGAAGTGCAAAGTGGAGATG ATGAATTTGTTACCAGCGGTCGCTGCCCCAATCACTGCTACATTGACAGCCACTACAATGGTCACTGCTTTTATGGTATGA
AA sequence Show only first row Show all	>Lus10025546 pacid=23144957 polypeptide=Lus10025546 locus=Lus10025546.g ID=Lus10025546.BGIv1.0 annot-version=v1.0 MISSPFILLLLLQTLLLLQNCQAIGNGGNCEPSSCGNIPIIKHPFRLTADPQICEDYNYNLSCESNTTILYLMDSSARFYVQAIDYNNLTIRLVDAGVVR GNCSSFPKTPLSLGGYDPYATGRYRGTSQIIEHLDEVLTLISCENPMVNSAMFMEIALCIDRSRDSSPHYYYYSVIDGDRGGGGGGVDLFSSGKKCKVEM MNLLPAVAAPITATLTATTMVTAFMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	1.4	0.9532
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	3.5	0.9169
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	3.5	0.9269
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	3.5	0.9411
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	5.7	0.9381
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	9.7	0.9222
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	12.8	0.9090
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	14.0	0.8833
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	15.2	0.9124
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	15.4	0.8969

Compare expression of checked genes

Lus10025546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.