Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 322 / 5e-102 Protein kinase superfamily protein (.1.2) AT1G66930 320 / 8e-101 Protein kinase superfamily protein (.1) AT1G66910 317 / 7e-100 Protein kinase superfamily protein (.1) AT4G18250 320 / 4e-99 receptor serine/threonine kinase, putative (.1) AT5G38280 315 / 4e-99 PR5K PR5-like receptor kinase (.1) AT1G67000 320 / 1e-98 Protein kinase superfamily protein (.1) AT5G38260 309 / 5e-97 Protein kinase superfamily protein (.1) AT1G66980 317 / 3e-96 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39030 308 / 5e-95 Protein kinase superfamily protein (.1) AT5G39020 306 / 3e-94 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026761 [exp] 872 / 0 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 735 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 493 / 9e-169 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 332 / 1e-105 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 314 / 1e-98 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025545 [exp] 299 / 5e-97 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 302 / 8e-95 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 302 / 2e-93 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 261 / 9e-80 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125600 [exp] 562 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.017G035500 [exp] 556 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 536 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.007G126200 [exp] 528 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 520 / 1e-179 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 513 / 1e-178 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 513 / 2e-176 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 505 / 1e-173 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 499 / 3e-171 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 370 / 1e-122 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025547 pacid=23144984 polypeptide=Lus10025547 locus=Lus10025547.g ID=Lus10025547.BGIv1.0 annot-version=v1.0 ATGAGTTTCATATCAAAGGAAACAGCAATATTTTCAATGCACTTGTTCTCTTTCATTTCAGTAGTACTAGCAGCAAACCATGGATCAGCAAGCCATGACA GTTTTTGCAGAAGCAACTCCAGAAGCTGTGGTGGGACAAACAGCACAACAGATTATGATATAAGGTTCCCATTCACAATCAAAGGCAAGCCATCCGAGTA CTATGGATATCCAGGGTTTTCGCTTTCTTGCCGAAATGGAAGTAATAAACCCCTGATCCATCTCCCAAATTCTGTGAACTTGACAGTTATAAGTATTGAC TATGAATCTCAGGTGGTTCATGCAAAGAGCCCAAATGACTGTCTGCCTGCACAATTCCTGCACCTAAATCATTTGGCCTCTATGTTCGAAATAACTATGT ATGACATTCCACTACCTGATTCCTGGCCTGCTAGTCAGAGCCTTGAGCTGAGCTGGTCAAAACCAGATTGCAGCAAATGCTACAAGTCAAAAGAGCAATG TTGTGTGTTGAAGCAGGGGAGCCCTGAACCTGAAGCTCAATGTTGGCCTGGTTTCACCAACAATAATAAAGTGTCGCTACTAAAGAAGGGACTGATAGCT GGAGTGGTACTGGGTTCAGTTTTCATAGTGGGACTTCTCATTTCCCTCTACCTTGCATACAAGCATGACCGTAAAGAAAGGGAATACCGCGTTAAAATCG ACAAGTTCTTGGATGATTACAAGTCCCTTAAGCCTACACGGTTCACATATGCTGATATCAAGAGGATCACAAACCAGTTCAGTTGTGAACTGGGTCGAGG AGCTTATGGAACAGTGTTCAAAGGCAAGCTGTCAACTGAAATCCAGGTAGCCATTAAGGTCCTTAACAGCGGCTTGAAAGGAAATGGAGAAGAGTTTGTA AATGAAGTGGGAACAATGGCTAGGATCCACCACGTCAATGTGGTTAGATTGATTGGGTTTTGTGCAGATGGGTTTAGGAGAGCTCTGGTCTATGAGTACT TACAAAATGACACATTGCAAAAGTACATCTCTTCTTCATCGTCCAAACTTGACTGGAAGAAGCTCCAAGACATTGCTCTTGGAATAGCCAAAGGGATTGA GTATCTTCACCAAGGGTGCGAGAACAGAATCCTGCATTTTGACATCAAGCCTCATAACATCCTCCTAGATCAGAGCTTCAACCCCAAGGTCTCGGATTTC GGGCTGGCCAAGCTGTGTGCCAAGGATCAGAGTGTCATATCTATGACAACAGCTAGAGGGACAATTGGATACATTGCGCCGGAAGTGTTCTCTAGGAACT TTGGGAGCGTATCTTTCAAGGCTGACGTGTACAGTTTCGGGATGTTGTTGCTGGAGATGGTTGGAGGAAGGAAGAATGTTGACGAGACAGCTGCAGATGG TGAGCAGATATACTTTCCGGAGTGGATTTATAACCTATTTGATGAATCTGGGGAAGATGTGAGGGTTGAGATTGAGGAACAGGAGGAAGAAGAAGAAGAG AAGAAGATTGGTAAGAAGCTAGCAGCAGTGGGGCTGTGGTGTATTCAGTGGAAACCAAGTGACCGGCCTACGATGAAGCTAGTGGTTCAAATGCTGGAAG GAGAAGGTGATAGTTTAACACCACCTCCTAATCCTGTTGCCTCAAACAATGGTGGAGGTTTGAGGATGACAAGGCTGCAGGCTGGAGGTAGTCGTGTGCC AAGAATGGTTGTAAAGACAGGGATGGAAATTATTCCAGAAACAGAAGAATGA
AA sequence Show only first row Show all	>Lus10025547 pacid=23144984 polypeptide=Lus10025547 locus=Lus10025547.g ID=Lus10025547.BGIv1.0 annot-version=v1.0 MSFISKETAIFSMHLFSFISVVLAANHGSASHDSFCRSNSRSCGGTNSTTDYDIRFPFTIKGKPSEYYGYPGFSLSCRNGSNKPLIHLPNSVNLTVISID YESQVVHAKSPNDCLPAQFLHLNHLASMFEITMYDIPLPDSWPASQSLELSWSKPDCSKCYKSKEQCCVLKQGSPEPEAQCWPGFTNNNKVSLLKKGLIA GVVLGSVFIVGLLISLYLAYKHDRKEREYRVKIDKFLDDYKSLKPTRFTYADIKRITNQFSCELGRGAYGTVFKGKLSTEIQVAIKVLNSGLKGNGEEFV NEVGTMARIHHVNVVRLIGFCADGFRRALVYEYLQNDTLQKYISSSSSKLDWKKLQDIALGIAKGIEYLHQGCENRILHFDIKPHNILLDQSFNPKVSDF GLAKLCAKDQSVISMTTARGTIGYIAPEVFSRNFGSVSFKADVYSFGMLLLEMVGGRKNVDETAADGEQIYFPEWIYNLFDESGEDVRVEIEEQEEEEEE KKIGKKLAAVGLWCIQWKPSDRPTMKLVVQMLEGEGDSLTPPPNPVASNNGGGLRMTRLQAGGSRVPRMVVKTGMEIIPETEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66920			Protein kinase superfamily pro...		Lus10025547 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002175 [exp]	2.6	0.9091
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	8.0	0.9041
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	8.7	0.8997
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	9.9	0.8724
					Lus10010378 [exp]	12.7	0.9021
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	14.1	0.8860
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	14.4	0.8811
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	18.3	0.8253
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	19.4	0.8834
					Lus10032860 [exp]	21.9	0.8909

Compare expression of checked genes

Lus10025547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.