Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39020 210 / 6e-63 Malectin/receptor-like protein kinase family protein (.1) AT5G38260 206 / 2e-62 Protein kinase superfamily protein (.1) AT1G66980 210 / 4e-62 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 209 / 4e-62 Protein kinase superfamily protein (.1) AT1G66920 202 / 3e-61 Protein kinase superfamily protein (.1.2) AT5G39030 205 / 5e-61 Protein kinase superfamily protein (.1) AT1G66910 202 / 5e-61 Protein kinase superfamily protein (.1) AT5G38250 199 / 3e-60 Protein kinase family protein (.1) AT1G66930 199 / 2e-59 Protein kinase superfamily protein (.1) AT1G70250 200 / 3e-59 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022359 [exp] 402 / 1e-138 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 392 / 2e-138 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 395 / 3e-134 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 379 / 6e-134 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025544 [exp] 373 / 5e-129 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 325 / 6e-108 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027116 [exp] 273 / 7e-93 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1) Lus10027119 [exp] 271 / 3e-88 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10014924 [exp] 248 / 2e-78 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 282 / 4e-95 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 273 / 8e-88 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 270 / 3e-86 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 265 / 8e-85 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.015G122000 [exp] 251 / 1e-82 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 258 / 5e-82 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 255 / 1e-80 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G125200 [exp] 250 / 2e-80 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 253 / 1e-79 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 253 / 2e-79 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025549 pacid=23145059 polypeptide=Lus10025549 locus=Lus10025549.g ID=Lus10025549.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGAAATCAGTCAGCATATATGATAAAATAGAAGAATTCATTCGAAACCAGAACCTCATGCCAATCAGGTACATCTTTCGCAAGCAACAAG GATACTTAACGTTGAGCATTGAACAACTGTATCGAATTTCTATCGGAGTGGCTAGCGGGATTGAATATCTTCATAGAGGGTGTGCCATGCAGATTCTGCA TTTCGACATCAAGCCCCACAACGTTCTTCTTGACGATAACTTTAACCCGAAACTGCCAGATTTCGGGCTGGCTAGGCTGTATTATGCCGGCGATAGAGTT GCAACTCTAACTGCAGCAAGGGGAACCATTGTGTACATGGCGCCAGAGCTGTTCTACAGGAACATCGGAAGCGTATCTTACAAAGCTGATGTCTATAGCT TTGGAATGTTACTGTTGGACATGGCGGAGAAAAGGCATAACTCGAATGCTACAATAGGTTGTTCGAGTCAAATTTACTTCCCGTTCTGGGTTCATGATCA GGTTGTGTCGTCCACACAAGGAACTCCTATTGTAGCTGGAGATGATGATGTAACAGAAGAGGAGAATGAGATTGCAAAGAACATGGTGATTGTAGGGTTG TGGTGCATCCAGACGAATCCTGATAGTCGTCCTCCGATGAACAAAATGGTGGAGATGCTTGAAGGAGAGCTAGAAAGCATACCACTGCCTTCTAGACCTG TGTTTTATGCTGGAGAATCTGTAAGAAACGTCGAATAA
AA sequence Show only first row Show all	>Lus10025549 pacid=23145059 polypeptide=Lus10025549 locus=Lus10025549.g ID=Lus10025549.BGIv1.0 annot-version=v1.0 MAKKKSVSIYDKIEEFIRNQNLMPIRYIFRKQQGYLTLSIEQLYRISIGVASGIEYLHRGCAMQILHFDIKPHNVLLDDNFNPKLPDFGLARLYYAGDRV ATLTAARGTIVYMAPELFYRNIGSVSYKADVYSFGMLLLDMAEKRHNSNATIGCSSQIYFPFWVHDQVVSSTQGTPIVAGDDDVTEEENEIAKNMVIVGL WCIQTNPDSRPPMNKMVEMLEGELESIPLPSRPVFYAGESVRNVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	0	1
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	3.5	0.6404
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	9.8	0.6395
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	10.7	0.6437
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	14.8	0.6743
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Lus10026212 [exp]	17.1	0.6539
					Lus10040955 [exp]	18.4	0.6504
AT3G51560			Disease resistance protein (TI...		Lus10014583 [exp]	32.9	0.5726
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	39.5	0.6062
AT3G14880			unknown protein		Lus10013746 [exp]	53.5	0.5842
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	64.7	0.5635

Compare expression of checked genes

Lus10025549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.