Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27090 715 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 271 / 1e-80 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 169 / 3e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 165 / 3e-42 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT4G30130 162 / 1e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 162 / 2e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 162 / 2e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 158 / 7e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 133 / 4e-32 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 125 / 1e-29 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026763 [exp] 914 / 0 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 295 / 5e-89 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 294 / 9e-89 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 199 / 7e-54 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 195 / 2e-52 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 186 / 3e-50 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 188 / 5e-50 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10015534 [exp] 169 / 4e-44 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 152 / 4e-40 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197700 [exp] 812 / 0 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 810 / 0 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 305 / 3e-92 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 288 / 6e-86 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 201 / 1e-54 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 199 / 4e-54 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 183 / 1e-48 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 177 / 2e-46 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 176 / 1e-45 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 171 / 3e-44 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10025550 pacid=23144973 polypeptide=Lus10025550 locus=Lus10025550.g ID=Lus10025550.BGIv1.0 annot-version=v1.0 ATGGGGGCTAATAACTCCAAGGTAGAGGAAGATAAGGCCTTGCAGCTTTGTCGTGCGAGAAAGAAGTTCGTAAGGCAAGCACTCGACGGTAGATGCTCCC TTGCAGCTACACACGTTGCTTACATTCAGTCCCTTAGAAGCACAGGAGTTGCATTAAGGAAGTTTGTCGAACCCGACCTTCTTCCAACTGAATCATCACT CTACACTTCCACCAGTGCTACACCAGAGCCGAATTTACGAACTGACAAGGGCTTTTCACACTTCTCGGTCTCGTCTCCATCTGTATCCCATCCCGGAGAT GCGGCTGAAAACGCACACCTTTCTAGGTCGCCCACTCCGCCTAGTTCCCGTAGGTTTCAGGTCAACCATATGAAGTTCAAAGGCTTCCCTTCTAAAAAGG TTGAAGAAAAGCCTCCGGTTTCGGTTATAGCAACAGTCACTTCTTCCAGTAATATCCCACAGGATGCAACACCACCGCCTAAGTCCACCGAAGAAAAGCC TGAAGTATCATCCTCCGAACCTTCCTGGGATTACTTTCAGCTTTTCCATCCGATCGATCACGAGTTTACTTCCCAAGATGGAAAGGGAAGTAATAGCCAC AGGTTTGAGCATGGTGATGAAGAAGGAATTCCCGAGCTGGAAGATGAAGAAGAGGACAAGGCTTCGTTTTGTGAAAGCGATGGATATGATGATTCGGAGG ATGGATTCAATGATGACCCTCCCCCGGAGAAACTCGTACGAAGTTATCAGAATGTCAATAGGGTGCATGATCATCATCACATTGCCCCAAGCCCTTCACC TACTGTGACTTCTACACAGAGTGTAGCTTCGGAAGGGGAGTTTTTGAACAGAGAGAAGAGTAACTCTCCTTATTTATCACCACTACTAAGAACTCCGACA TCATCAGCTGTTGATGTTTCGGCTGAGAGAAAGAAACCATCTTCTGTGAAAGAAGATCAGAATGAGAACAAGGTTGCCCCTAAAGACTTCTTTTCAAGCA TGAGGGACATTGAGCATCTATTTAACAAGGCTTCCGATTCTGGAAGAGAAGTTCCGAGGATGCTCGAAGAAAATAAGCTGCATTTCCGTCCCTTGGCCGC GACGAAAGATAATGGGTCGGCTGCTTCCACTCTACTTAAGGCTTGTTTTTCTTGTGGAGAAGATCCTACACATGTACAAGAAGAGCCCGCTCAAGATGCT GTAAAGTACTTAACTTGGCACAGGACAACGTCGTCTCGTTCATCATCATCAAGAAATCTTCTTGGATTGAATTCTAAAGATGACGCGGAGGATCTTGCCG GTAATCTCTTTGACAATTTCTGCATGAATTCTGGTAGTCATGCTTCAACCTTGGATAGACTACACGCTTGGGAGCGAAAACTTTACGACGAAGTTAAAGC TAGCGAAATCGTAAGGAGGGAATACGATGCCAAATGCAGATTCTTACGGCAGCTGGAATCGAAAAATGAAGGCTCCTATAGGATCGATAAAACCCGTGCC AATGTTAAAGATCTGCATTCAAGAATCAGGATTGCAATCCAAAGAATTGATTCCATATCGAAGAGGATTGAGGAATTGAGGGATAAAGAGCTTCAGCCAC AACTTGAGGAGTTAATTGAAGGGCTTAGTCGAATGTGGGAAGTGATGTACGAATGCCACAAACTCCAGTGCACGATCATCTCGATAGCGAACGGGAACAC GAAGATCTCACTGCCATCAGAGTCGCGCCGCCAAATCACCCTCCATCTCGAAAACGAGCTCGCCACACTGTGCTCCACTTTCACAAAGTGGACGAGTGCC CAAAAATCGTACCTCAAGTCCATAAATGACTGGCTCTTCAAATGCGTCGTCATCCAGGAGAAGACGTCGAGGAGGAAGAAGAGGGCGCCGAACACTGCAT TGATGCTTAGACGCTGTGGCGCACCAATCTACGCCACTTGTGGCATGTGGCTGGACAAGCTCGAGGCCTTACCGGCAAGAGAAGTGGCGGAGTCCATCAA AGGGTTAGCTGCTGAAACGAGCAGGTTTATTCCGCTTCAAGAGAGGAAGAAGCAAGGGAAGAAAGCTGAAAACTTGAATAGTTCGTGGAACGATAACGGT AGCGACTCGGGGGCAAACATGTTGAGAGACGACGGGGTTCCTGGCTCGGAACGGTTCCGGTCGAGTTTGGAAGGGTTCCTCGGACAGCTCAGCAAGTACG CGGAGTTGTCGGTGAAAGCGTATAGAGATGTTGAGAATGCCATCCAGGCTGCCAAGCATCAGTTCGAGTCGGTCAACTCACAAACGCAGGGTCAAACCTA G
AA sequence Show only first row Show all	>Lus10025550 pacid=23144973 polypeptide=Lus10025550 locus=Lus10025550.g ID=Lus10025550.BGIv1.0 annot-version=v1.0 MGANNSKVEEDKALQLCRARKKFVRQALDGRCSLAATHVAYIQSLRSTGVALRKFVEPDLLPTESSLYTSTSATPEPNLRTDKGFSHFSVSSPSVSHPGD AAENAHLSRSPTPPSSRRFQVNHMKFKGFPSKKVEEKPPVSVIATVTSSSNIPQDATPPPKSTEEKPEVSSSEPSWDYFQLFHPIDHEFTSQDGKGSNSH RFEHGDEEGIPELEDEEEDKASFCESDGYDDSEDGFNDDPPPEKLVRSYQNVNRVHDHHHIAPSPSPTVTSTQSVASEGEFLNREKSNSPYLSPLLRTPT SSAVDVSAERKKPSSVKEDQNENKVAPKDFFSSMRDIEHLFNKASDSGREVPRMLEENKLHFRPLAATKDNGSAASTLLKACFSCGEDPTHVQEEPAQDA VKYLTWHRTTSSRSSSSRNLLGLNSKDDAEDLAGNLFDNFCMNSGSHASTLDRLHAWERKLYDEVKASEIVRREYDAKCRFLRQLESKNEGSYRIDKTRA NVKDLHSRIRIAIQRIDSISKRIEELRDKELQPQLEELIEGLSRMWEVMYECHKLQCTIISIANGNTKISLPSESRRQITLHLENELATLCSTFTKWTSA QKSYLKSINDWLFKCVVIQEKTSRRKKRAPNTALMLRRCGAPIYATCGMWLDKLEALPAREVAESIKGLAAETSRFIPLQERKKQGKKAENLNSSWNDNG SDSGANMLRDDGVPGSERFRSSLEGFLGQLSKYAELSVKAYRDVENAIQAAKHQFESVNSQTQGQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	0	1
AT5G66440			unknown protein		Lus10040435 [exp]	2.0	0.8170
AT5G66440			unknown protein		Lus10023551 [exp]	4.6	0.8463
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	5.5	0.7713
					Lus10039535 [exp]	11.7	0.6992
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10019067 [exp]	12.2	0.7736
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	12.4	0.7280
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	13.5	0.7540
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	13.9	0.7065
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10036321 [exp]	14.9	0.7761
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	19.6	0.7333

Compare expression of checked genes

Lus10025550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.