Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18220 778 / 0 Noc2p family (.1) AT3G55510 282 / 9e-85 RBL REBELOTE, Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027010 [exp] 1112 / 0 AT2G18220 760 / 0.0 Noc2p family (.1) Lus10036510 [exp] 285 / 6e-81 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041417 [exp] 272 / 5e-79 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10020167 [exp] 254 / 2e-73 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10026968 [exp] 181 / 7e-50 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012800 [exp] 857 / 0 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 449 / 7e-152 AT2G18220 416 / 4e-140 Noc2p family (.1) Potri.008G043400 [exp] 336 / 7e-104 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.003G213450 [exp] 116 / 1e-29 AT2G18220 118 / 5e-31 Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Lus10025551 pacid=23144953 polypeptide=Lus10025551 locus=Lus10025551.g ID=Lus10025551.BGIv1.0 annot-version=v1.0 ATGGCTGTCGGGTTGAAAAACTTAGTAACCAAAAACAAAGGGTTCCTTTGCCTTGCTGGATCCTCTAATAGAAAATTTTTTGATATCAAGCGAGGATTCA GCTCGTCATCACCAGCAGGCGAAGGCGAAGGCGAAGGCGAAGGAGTAGTCTCCAATCCCCCGCTCATCTCTAAAAATGACTTAGGTGATCCTGAGAAGAT CAAGCAGTATCTCGTTGCTGACTGTGGACTTGATATTGTTAAGCGTGTAAGGCTTGTTAATGTTAAACCCAAAGCCTCTGGTAACAAACACGCCAAGGAA TGCGATCGGCTTCTTCAGTTTTATGCAGAGCTAAGCTCTCTGATTACTATTCTTAACATGGACGTCGAATACCCAGTTAAGGATCTGGAAGATGAGACGA TGGAGGAAGATGATGATCAAGAGATTGGAAAAATGGCCGGTAAAGGGCACAAAGATGAGCTAGAAAGACTCAAGACAAAGGATCCTGAGTTTTATAAGTT CTTGCAAGAGCAAGATAAGGAGCTTCTTGCATTTGAGGAGGATGATGAAGAGGATGAGGAGGATAATGATGCTGATGCCGATGCGGATGATGATGCTGAT GAGGATGAGCCAGTGAGCGATCATGTCCAATTTGAGAAGGAGGATAAATCATCTAAATATGTTGTTACCACTTCAATGGTTGAGTCCTGGATCAATGCAG CGGTAGAAGAAGGAAAAATAGGTGCACTTCGCTCTCTTCTGAAAGCTTTCAGAATTGCTTGCCACTATGGCGATGATAGCGGGGATGACTCTGCAACAAA ATTAAGTACCATGTCCAGTAGTGTGTTCAATAAAATAATGGTGTTTGTCCTGAGTGAAATGGATGGAATCCTTCGCAAGATGTTGGGCTTGCCTTCTTAT GGTGGCAAGAAAGAGACGATGATTGATGTAATGGCCACTAGGAAGGGGGAGAACTACAGCCACCTGGTGAAGTCATATCTGGGAAATGCTCTTCATGTTT TAAATCAAATGACTGATGCACAGATGATCTCTTTCACATTACGTCGCCTCAAGTATTCGTCTCTACTATTGGCTGCTTTTCCAAGTCTCTTGCGCAAGTA TGTCAAGGTTGCCCTTCACTTTTGGGGTACAGGAGGAGGCGCCCTCCCTGTTATATCTACTCTCTTCCTGAGGGACTTATGCATACGACTTGGGTCAGAA TGTGCAGATGATTGCTTCAAAGGCATGTATAAGGCATATGTTCTGAACTGTCAGTTCATAAATGCTGTAAAGATGCAGCATATCCAATTTCTTGGGAATT GTGTGATAGAAATTTTCCGGGTGGACCTTCCTACTGCCTATCAACAAGCTTTTGTTTACATTCGACAGTTGGCAACGATTCTAAGGGATGCAATCACTGT GAAAACTAAGGAATCATTCCGCAGGGTTTACGAATGGAAATATATGAATTGCCTTGAACTTTGGACTGGTGCGGTCTGTGCCTACAGTTCTGAAGCTGAT TTCAGGCCTTTAGCCTATCCATTGACTCAAATTATTTCGGGCGTGGCTTCTCTGGTTCCAACTGCTAGATACTTTCCTCTTAGATTAAGATGTGTCAGAA TGCTCAATCGTATCGCTGCATCCACTGGAACATTTATACCTGTTTCCACTCTCCTCTTGGACATGTTAGAAATGAAAAAACTAAACAGGCCACCCACTGG AGGTGTTGGCAAAGCTGTTGATTTGCATACCATGTTGAAGGTGAACAAGCCTACATTGAAAACACGTGCATTTCAAGAAGCCTGTGTATATTCCGTGGTC GAAGAACTCGCTGAACATTTAGCTCAATGGAGTTACTCAATGGCTTTCTTTGAACTGTCTTTTATTCCAGCTGTGCGATTGCTAACCTTCTGCAAAGTTA CCAAAGTTGATAGATTCAGAAAAGAAATGAGACAGCTTACACGTCAGATTGAGGCCAACTCTAAGTTTACAAATGCAAAGCGTACGTCAATGACTTCCTT ACCCAATGATCCTGCAGCGGCGTCTGAGATTGAGAATGAGAGCAAGATGGGGCCTAGTCCTTTGTCAAAGCATGTTGTCACATTGCGCGAAAGAGCAAAG CAAAGAAGTAGCTCATTGACGGAATCCAGTGTCGTAGTTGGGGAAAATTCTTCCATATTTCGCAAAAAGACATCAGAAGAAGATGATGATGATGACTACG AAGATGAAGATGATAATGGAAACGAGGAAGCCGCAGATGTGTTCAACTCCTCTTGGTTACCCACCGGCGTACCCAAGGGTAACCCTTCCGAGAAGAAGGA GAAGAAGAAGAAGCGAAAGAAAGGTCAACAAGAAGGTCCAGAAGATGACATCGTTGAGGATCTGGTATTGAGTTCTGACGAGGATGAACCTCTGACTCAC ATTTCTGACGATGAAGATGAGAAAGTGAAAGGCAGTCCTCGAAAGAAGAAGCGGAAACTATCAAAGAAGGAATCTCGTTCAAAGAAACCATGGAGGAAGC AGAGGAAAAGTTAA
AA sequence Show only first row Show all	>Lus10025551 pacid=23144953 polypeptide=Lus10025551 locus=Lus10025551.g ID=Lus10025551.BGIv1.0 annot-version=v1.0 MAVGLKNLVTKNKGFLCLAGSSNRKFFDIKRGFSSSSPAGEGEGEGEGVVSNPPLISKNDLGDPEKIKQYLVADCGLDIVKRVRLVNVKPKASGNKHAKE CDRLLQFYAELSSLITILNMDVEYPVKDLEDETMEEDDDQEIGKMAGKGHKDELERLKTKDPEFYKFLQEQDKELLAFEEDDEEDEEDNDADADADDDAD EDEPVSDHVQFEKEDKSSKYVVTTSMVESWINAAVEEGKIGALRSLLKAFRIACHYGDDSGDDSATKLSTMSSSVFNKIMVFVLSEMDGILRKMLGLPSY GGKKETMIDVMATRKGENYSHLVKSYLGNALHVLNQMTDAQMISFTLRRLKYSSLLLAAFPSLLRKYVKVALHFWGTGGGALPVISTLFLRDLCIRLGSE CADDCFKGMYKAYVLNCQFINAVKMQHIQFLGNCVIEIFRVDLPTAYQQAFVYIRQLATILRDAITVKTKESFRRVYEWKYMNCLELWTGAVCAYSSEAD FRPLAYPLTQIISGVASLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSTLLLDMLEMKKLNRPPTGGVGKAVDLHTMLKVNKPTLKTRAFQEACVYSVV EELAEHLAQWSYSMAFFELSFIPAVRLLTFCKVTKVDRFRKEMRQLTRQIEANSKFTNAKRTSMTSLPNDPAAASEIENESKMGPSPLSKHVVTLRERAK QRSSSLTESSVVVGENSSIFRKKTSEEDDDDDYEDEDDNGNEEAADVFNSSWLPTGVPKGNPSEKKEKKKKRKKGQQEGPEDDIVEDLVLSSDEDEPLTH ISDDEDEKVKGSPRKKKRKLSKKESRSKKPWRKQRKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18220			Noc2p family (.1)		Lus10025551 [exp]	0	1
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10006818 [exp]	12.2	0.7702
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	13.3	0.8476
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	16.7	0.8283
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	20.0	0.8419
AT4G26430		CSN6B	COP9 signalosome subunit 6B (....		Lus10025606 [exp]	21.3	0.7728
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10014950 [exp]	24.5	0.7519
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	25.7	0.8061
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10019258 [exp]	33.5	0.7920
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	37.1	0.7672
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	48.8	0.8124

Compare expression of checked genes

Lus10025551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.