Plant FIBer expression Database

Lus10025552 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G21070 270 / 2e-92 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026764
[exp]
281 / 2e-96 AT5G21070 400 / 1e-143 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G158800
[exp]
272 / 4e-93 AT5G21070 382 / 1e-136 unknown protein
Potri.004G196600
[exp]
263 / 1e-89 AT5G21070 393 / 6e-141 unknown protein
PFAM info
Representative CDS sequence
>Lus10025552 pacid=23144944 polypeptide=Lus10025552 locus=Lus10025552.g ID=Lus10025552.BGIv1.0 annot-version=v1.0
ATGGATAGCTTCACAGCCGAAGATCTATCCACGATCGGAGGAATCGCCACCGTTTCGCTTCTCCATTCCTTCATCCCCACTCACTGGCTGCCTTTCTCCA
TTGTCGGCCGCGCTCAGAAATGGACTCTCTCGAGAACTCTCTTCGTCACTGCCTTCGGAGCTGTTCTGCACGTCGTGTCAACTTCACTCCTCGGCATAAC
AGCAATCACAATGGCAAACACCATTGCCGGTGAAGAAACAGTCCACAAGCTAGCTTCGCTTCTTCTCGTGGTTCTTGGTGGCGGTTATGTGATACTGTAT
CTCACTGGCAAAGGTGGACACAGTCATTCCCATAACCAACCAATGGAGAAGATGGCTGTTGCAGGGCTTGTTCTCGTTCCTGCGTTATCTCCTTGCGCTA
CTACGCTTCCAGTGTTCCTTGCTGTTGGAAACTCGTCTTCTATGATGGTGCTTGCCATTATTGTACTGCTAATCAGCAGCACGATAACCGTGATCTCCTT
TGCATTTTGGTTAACGCATTTCGAATGTGTGGAAGCAATTCATGATTTTTTGCTCGTGTGTGGTGTTATCTCACAGCACGATTACCGTAATGACCTCACT
GGTGGCACTGTCCTTCTACGGCGCGAGTCAGATCAAGTTCCATTGGGTGGAACGGTATGA
AA sequence
>Lus10025552 pacid=23144944 polypeptide=Lus10025552 locus=Lus10025552.g ID=Lus10025552.BGIv1.0 annot-version=v1.0
MDSFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVVSTSLLGITAITMANTIAGEETVHKLASLLLVVLGGGYVILY
LTGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLISSTITVISFAFWLTHFECVEAIHDFLLVCGVISQHDYRNDLT
GGTVLLRRESDQVPLGGTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G21070 unknown protein Lus10025552
[exp]
0 1
AT3G52500 Eukaryotic aspartyl protease f... Lus10016967
[exp]
5.5 0.8478
AT1G04430 S-adenosyl-L-methionine-depend... Lus10021177
[exp]
8.7 0.8469
AT4G34490 ATCAP1 cyclase associated protein 1 (... Lus10040460
[exp]
8.9 0.8267
AT1G04430 S-adenosyl-L-methionine-depend... Lus10011815
[exp]
12.4 0.8399
AT3G49220 Plant invertase/pectin methyle... Lus10022412
[exp]
13.7 0.8111
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10002939
[exp]
14.1 0.8253
AT3G25140 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRA... Lus10011834
[exp]
16.4 0.8141
AT3G25130 unknown protein Lus10011835
[exp]
17.1 0.7944
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Lus10040709
[exp]
24.2 0.8215
AT5G04310 Pectin lyase-like superfamily ... Lus10023542
[exp]
25.8 0.7501

Lus10025552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.