Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66910 318 / 2e-99 Protein kinase superfamily protein (.1) AT1G66920 315 / 9e-99 Protein kinase superfamily protein (.1.2) AT4G18250 319 / 5e-98 receptor serine/threonine kinase, putative (.1) AT1G70250 317 / 1e-97 receptor serine/threonine kinase, putative (.1) AT5G38280 310 / 3e-96 PR5K PR5-like receptor kinase (.1) AT1G67000 309 / 6e-94 Protein kinase superfamily protein (.1) AT1G66980 313 / 9e-94 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 300 / 6e-93 Protein kinase superfamily protein (.1) AT1G66930 301 / 8e-93 Protein kinase superfamily protein (.1) AT5G39020 296 / 7e-90 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025547 [exp] 687 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 547 / 0 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014923 [exp] 537 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025491 [exp] 345 / 1e-113 AT5G53110 80 / 2e-16 RING/U-box superfamily protein (.1) Lus10014924 [exp] 350 / 9e-112 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025545 [exp] 313 / 2e-101 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 315 / 5e-99 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 312 / 1e-96 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 311 / 1e-96 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125600 [exp] 596 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.017G035500 [exp] 588 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 563 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 555 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.007G126200 [exp] 552 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 551 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 547 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 546 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 523 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 432 / 8e-146 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025553 pacid=23145015 polypeptide=Lus10025553 locus=Lus10025553.g ID=Lus10025553.BGIv1.0 annot-version=v1.0 ATGAATTCCCCTTTAACAACTATTCTGTGCTGCTTGATTGTCCTACTTGCAGAGTCGGCAGAAAGCCTCAACCTTTCTTGCAGCAGATCACCAAGCTGTG GTACAGGAACTAACAACACAGCAGACGACATCAAGTTCCCTTTCACCATCAAAGGGAAGCCATCTGGATACGATGGATTCCCAGGGTTCGAGCTTTCTTG CAACCCAAGCAACCAAACAATTCTCCATCTCTCAAATTCGGTCAATTTCACGCTCCTCAAGATTGACTACGAATCTCAGCTGGTCTACGTTAAGAGCCCA GACGATTGCCTCCCCAGGCAGCTCAGGGATCTGCCGAAAGATTCATCCTCATCGCGATTCAAGATGGCGGGGAGGTTTCAGACTTACAGTTTCTTTGACT GTCCGAAGCTGAAGCATATCAGTCAAACGATGACGTCGGTGCCTTGCCTTGGAAGTAATGTTTATGTGTATTTTTCTGTGAATCCACTGAATGATGTCAA CTTGGTGTCTTGTACCAAGATGTTTGACATCCCTGGATTGGGAGCACCGTATCAGGCTGATCACAGCCTTCAGTTGAAGTGGTCTGAACCGGATTGCGGT AGATGTTACAGGAAAAGGGGCCAATGTTGTGTGCTGAAAAATGGCAGTCCTGATGAACCCCAAGCTGAATGTTCTGGTGGTGTTACTGATGAGACAAAGG TTTCTCCTTTGAAGAAAGCACTGATAGCAGGAGTGGTTCTGGGTTCACTTCTCATTGTGGCATCAATGTATGCACTCTACCGTGCATACAGGTTCGACAG AAAGGAAAAGGAATACCGGCTTAAGATCGAGAAGTTCTTAGACGATTACAAGGCACTCAAGCCTACACGATTCTCCTATGCAGATATCAAGAGAATAACG AACCAGTTTGATGCTGAACTGGGACGAGGAGCTTATGGAACAGTGTTCAAAGGCAAGCTGTCGACCGAAATCGAAGTAGCGGTCAAAATTCTCGACAGCA GCACCATAGGAGACGGAGAGGACTTTGTTAACGAAGTTTCAACAATGGCCAGAATCCACCACGTCAATGTGGTCAGATTGATAGGGTTCTGTGCAGACGG GTTTCGACGAGCTTTGGTTTACGAGTTCTTGCCAAACGATACCTTACAGAAATACATAGAAGGAAAAGACCAGCAGAGGCATCACAGTTTGCAGCTAGGG TGGAACAAATTTCATGACATTGCTCTTGGAATAGCGAAAGGGATAGAGTACCTTCACCAAGGGTGTGAGCAGCGGATCCTGCATTTCGACATCAAGCCCC ACAACGTCCTCCTCGACCAGGACTTCAGCCCGAAGATCTCCGATTTCGGCCTGGCTAAGCTGTGTGCAAAGGACCAGAGTGCCATATCCATGACAACAGC AAGAGGGACGATCGGCTACATTGCTCCGGAAGTGTTTTCGAGGAACTTTGGAAACGTGTCTTACAAGGCTGATGTATACAGCTTCGGAATGCTGTTGCTG GAAATGGTTGGAGGGAGGAAAAATGTTGATTTCACTGCAGCAGACGGTGATCGTGAGATATACTTCCCAGAGTGGATTTATAACCTTTTCGACGAATCTC GAGAAGATGTAAGGGTTGATGTTGTTGCAGAAGAAGAAAAGGATGTAGAAGATGGCAAGATCATTAAGATGCTAGCAGTAGTCGGGCTATGGTGCATTCA ATGGAATCCAGTTGATCGACCTCCAATGAAACTTGTTGTGCAAATGCTGGAAGGAGAAGGTGGCAATTTGACACCGCCTCCTAATCCTGTCAGCTCTAAT GGTGGTGGCCATGGTGCAACAAGAACGGAAGCCATGGCGAAGTCAATGCAGCTGCAAGAGTTAGAAATCATACCGGAAACAGAAGAATATCAAAGTTCGA GTAGTATGAGACCAGAAGAACATCAAAACTTGTCGTCGTTGAGACTGCAACTCTAG
AA sequence Show only first row Show all	>Lus10025553 pacid=23145015 polypeptide=Lus10025553 locus=Lus10025553.g ID=Lus10025553.BGIv1.0 annot-version=v1.0 MNSPLTTILCCLIVLLAESAESLNLSCSRSPSCGTGTNNTADDIKFPFTIKGKPSGYDGFPGFELSCNPSNQTILHLSNSVNFTLLKIDYESQLVYVKSP DDCLPRQLRDLPKDSSSSRFKMAGRFQTYSFFDCPKLKHISQTMTSVPCLGSNVYVYFSVNPLNDVNLVSCTKMFDIPGLGAPYQADHSLQLKWSEPDCG RCYRKRGQCCVLKNGSPDEPQAECSGGVTDETKVSPLKKALIAGVVLGSLLIVASMYALYRAYRFDRKEKEYRLKIEKFLDDYKALKPTRFSYADIKRIT NQFDAELGRGAYGTVFKGKLSTEIEVAVKILDSSTIGDGEDFVNEVSTMARIHHVNVVRLIGFCADGFRRALVYEFLPNDTLQKYIEGKDQQRHHSLQLG WNKFHDIALGIAKGIEYLHQGCEQRILHFDIKPHNVLLDQDFSPKISDFGLAKLCAKDQSAISMTTARGTIGYIAPEVFSRNFGNVSYKADVYSFGMLLL EMVGGRKNVDFTAADGDREIYFPEWIYNLFDESREDVRVDVVAEEEKDVEDGKIIKMLAVVGLWCIQWNPVDRPPMKLVVQMLEGEGGNLTPPPNPVSSN GGGHGATRTEAMAKSMQLQELEIIPETEEYQSSSSMRPEEHQNLSSLRLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	1.0	0.8568
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	5.3	0.8366
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	7.3	0.8456
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	8.2	0.8440
AT1G25275			unknown protein		Lus10006792 [exp]	8.8	0.8381
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	10.2	0.8345
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	12.6	0.8257
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	18.1	0.8558
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	18.7	0.7934
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	20.0	0.8150

Compare expression of checked genes

Lus10025553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.