Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 217 / 2e-63 Protein kinase superfamily protein (.1) AT1G66920 211 / 1e-61 Protein kinase superfamily protein (.1.2) AT1G66930 209 / 4e-60 Protein kinase superfamily protein (.1) AT1G66910 206 / 2e-59 Protein kinase superfamily protein (.1) AT1G66980 205 / 3e-57 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 201 / 2e-56 Protein kinase superfamily protein (.1) AT5G38280 198 / 2e-56 PR5K PR5-like receptor kinase (.1) AT4G18250 198 / 3e-55 receptor serine/threonine kinase, putative (.1) AT1G70250 197 / 3e-55 receptor serine/threonine kinase, putative (.1) AT5G39020 196 / 1e-54 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 854 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 593 / 0 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10022359 [exp] 542 / 0 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027006 [exp] 457 / 4e-159 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027013 [exp] 439 / 2e-154 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10014924 [exp] 423 / 2e-142 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10008335 [exp] 328 / 1e-104 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10026759 [exp] 308 / 3e-103 AT1G66930 196 / 5e-59 Protein kinase superfamily protein (.1) Lus10025545 [exp] 303 / 1e-99 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018600 [exp] 481 / 3e-165 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G126100 [exp] 461 / 5e-157 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125000 [exp] 453 / 3e-154 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 451 / 3e-153 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 449 / 3e-152 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 440 / 3e-148 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 422 / 2e-141 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 417 / 9e-140 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 417 / 2e-139 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 386 / 6e-130 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025554 pacid=23145099 polypeptide=Lus10025554 locus=Lus10025554.g ID=Lus10025554.BGIv1.0 annot-version=v1.0 ATGAAGAAACTCCATTTATCCATCTCCTTACCATTATTTCTTCCTCTGCTCCTAATCCAGAGCTGCCAAGCTGCAGATGGGGACTGTGAACCTTCCTCCT GCGGGAGCATCCCAATCATCAAGAACCCATTTCGACTCACAACTGATCCGACCAACTGCGGGAACCAAGGATACAACTTGTCATGCGAGAGCAATACAAC AGTGCTGTACATAAGCTCTGCAAGATACTACGTTCAGGCAATCAACTACGAAAACCTGACGATCAGGTTGGTGGATGAAGGTGTAGCAGCAAAGGGCAAC TGCTCCTCGCTCCCTCGCAACCCTTTGTCCGAAAACAGCTTCTACTTCTTGGATTCTTACATGGCCACAAGGGACAGGAAGGGGTTCCTGGCCATGTCAG CTAAAGAGGAGCACTTGAATGAGGTGTTGACTCTGGTAAGCTGTGAGAATCCTGTCAGCTCTGCAATGTTTATGGAGACAGCTCCTTGCATCGACAGAGC AGGAAATTCTCCGCGGTATGCAGTTATCGGTGGTGGTGTGAATGCATCAAGTTTGGAAAAGATGTGCAGAGTTGATATGATGACTATGCTACCAAAGAAG AAGAAGGGTTATGATAAGATGCCCTTTCAAGAGATTCACAGGCAGCTCGAGTATGGGTTTGAGCTTTCATGGCACCTGTACGAATGCGGTCTGAAAAACT GCTTGGGGGTTAATAGTTGCTACCTCGACAGATACAACAATGTCCTCTGCAATGTGGTGATAGCTCACTTGTTAATTCCTCCTCTGGGAACCCCACTGGT GTGTGTGTTTCTGATATATAAATGGCGAAGGAGACATCGATCAGCATACGACAAGATCGAGGAGTTCCTTCAGAACCACAACCTCATGCCGGTCAGGTAC TCTTACTCAGAGATCAAGAAGGTCACTCGAGGCTTCAAGGACAAGCTGGGTGAAGGCGGCTTTGGTTCCGTCTACAAAGGGAAGCTCCGTAGCGGTGGAT TTGCAGCTGTCAAGATGCTTGGGAAGTCCGCATCTGAAAAAGGAGGAGGTCAAGACTTTATGAGTGAAGTTGCTACCATTGGCAGGATTCACCATGCTAA TGTAGTGAGACTAATCGGCTTCTGCTCCGAAGGGACTAAGCGTGCTCTTGTCTACGAGTTCATGCCCAATGGTTCTCTTGACAAGTACATATTCCACAAG CAAGGTTATATCTCTTTGAGCTTGGAACAACTGTACCAGATTTCTGTCGGAGTGGCTCGAGCGATTGAATATCTGCACAGCGGCTGTGCAATGCAGATTC TGCATTTCGACATCAAACCCCACAACATTCTCCTCGATGAGAAGTTCAACCCGAAGGTGTCTGATTTTGGGTTGGCTAAACTTTATCAGGCTGGTGATAG AGTTGCAACTTTGACTGCTGTAAGAGGAACCATAGGATACACTGTTTGTCCCGGATAA
AA sequence Show only first row Show all	>Lus10025554 pacid=23145099 polypeptide=Lus10025554 locus=Lus10025554.g ID=Lus10025554.BGIv1.0 annot-version=v1.0 MKKLHLSISLPLFLPLLLIQSCQAADGDCEPSSCGSIPIIKNPFRLTTDPTNCGNQGYNLSCESNTTVLYISSARYYVQAINYENLTIRLVDEGVAAKGN CSSLPRNPLSENSFYFLDSYMATRDRKGFLAMSAKEEHLNEVLTLVSCENPVSSAMFMETAPCIDRAGNSPRYAVIGGGVNASSLEKMCRVDMMTMLPKK KKGYDKMPFQEIHRQLEYGFELSWHLYECGLKNCLGVNSCYLDRYNNVLCNVVIAHLLIPPLGTPLVCVFLIYKWRRRHRSAYDKIEEFLQNHNLMPVRY SYSEIKKVTRGFKDKLGEGGFGSVYKGKLRSGGFAAVKMLGKSASEKGGGQDFMSEVATIGRIHHANVVRLIGFCSEGTKRALVYEFMPNGSLDKYIFHK QGYISLSLEQLYQISVGVARAIEYLHSGCAMQILHFDIKPHNILLDEKFNPKVSDFGLAKLYQAGDRVATLTAVRGTIGYTVCPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	0	1
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	2.4	0.9012
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	5.2	0.8519
AT1G70250			receptor serine/threonine kina...		Lus10025555 [exp]	12.1	0.8873
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	16.6	0.8453
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	16.8	0.8139
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	23.4	0.8167
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	27.5	0.8375
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	28.0	0.8205
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	32.9	0.8496
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	33.5	0.8146

Compare expression of checked genes

Lus10025554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.