Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49150 918 / 0 GEX2, ATGEX2 gamete expressed 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027014 [exp] 307 / 1e-96 AT5G49150 150 / 3e-40 gamete expressed 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G124900 [exp] 1174 / 0 AT5G49150 993 / 0.0 gamete expressed 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF00630 [flax] [poplar] Filamin Filamin/ABP280 repeat
Representative CDS sequence Show only first row Show all	>Lus10025556 pacid=23145065 polypeptide=Lus10025556 locus=Lus10025556.g ID=Lus10025556.BGIv1.0 annot-version=v1.0 ATGGCTGGAGCATTTAACATTCTTATTGTGGATGACCGTTTTAAAGTCTTGGATTCGTCTCTGCATTACACAGTGTCGCCAGGGAGAATTTACCCTTCCG CGTGCATTGCTACTTGGATGGATCTGATGAGTGAGTTTACTGCTGGGAGTAAAGCCAGGATCTTTATAGTTCCCAGGGATGCGTTTGGGAATAATGTTAC TTCAATCGGTGAGGATTTGACTCCTCACAATTTCACCGTCTCTGTGCTTTATGGGAATGGTTTTCTTGCTAGTTTGCCTAACATCACATGCATCAGTTGG AACCACTCTGATTCCATCTTTGTCGAGTTTCTTGCTGAAAAAGCTGGAACCTTCGTTTTGGATGTACAAGGGGGAAACCAGACCTTGAATGGCTGCCCAC TACCATTTAAGGTGAATCCAGGACCTTTGGATGCTCAGAATTGCCGTGGTGTGTGGAAAGTTGAAACAAATGTTTGGCAGATATACTCCAAAATGGAGAT TTTCATATACCAACAGGATAAATATGGAAATATTGTCCCTGGATCATATGAGTTTGACGCTGATGTTATTGAAAAGGAGACCCATATGTTAGTACCTGTT GCAGATTTGCACTTTGAAGAAGTGTTGCCAGGAATCCAGTTGTTGTCTTTTGGTTTATATGAACCTGGAAGCTTCTTGCTTACCATCTCTGATTTCAACC ATAGCACAAACATCTCCGCCATGCCATTCGAGTACACAGTCTTTATAGGTTACTGTGATAGCTCAGCAAGCATTGTCAATGGAACTGGTTTAAATGATTC ACTTGCCGGTGAAACTGCAAGATTTTCACTCTATCTTGTTGATACTTTTCAGTATCCATCTTTTGTTGAAATAGAAAGCATAAGAGTTCAGATTGTGAGG GAAAACGATTCCTATAGTGTCCAACCCAGCATCTTTCCAATTGTCAATGGGAATGGATCAACTGACACATTGAGATATGATGCTATCGGTCAATTGGAAA TCTCTCCTGCACCTTCTGTTGATTTGAGCCGCATGTATGCCAGACGCCGCAATGTTCTTGCCAGTGTATATAATGTGGTTTATACCCCGGAGAGGAGTGG GACTTATGAAATCTTTGTATTTTGCGGTAATATTTTACTGAACAATGGTCACTCTTTCAAAAAGGAAGTCAAACCAGGTGACGTTGACTTATCACTGTCT GGGGTTGTTAGTTATGTTTCAAAGGTGGCAAAGATCATCCAGAATGAAGTGGTAGTCCAATTAATGGACTCATTTCGCAATCCAGTGCCACTTCTACAGT CAAGGCTGAAACTGGAGAGTGCTTCATTTAACAGCTCTGGATTCTCAGCTGGAATGTTCAATGACTATAACGATGGCTCTTATACTTGTGGCTACATGCT TAAAACTGTTGGAACTTATGAGATTTGTGTTTCATTTGATGGTCAACGTTTCTCAACCTGCCCGATCATGGTCAACGCTTATGGAGGTGAATTTTTTCCA AGAGCTTGCGATGACTATGTTTCGGTCTCCGAGGACGAGTCAGTGGCTTTTGATGTATTAGGAAATGACTACTTTGCGGGAAATAATGCAAGTATAACTC AATTCTCAAAGCCAGGTCGTGGTTCACTTCTACTCAATGGGCATGTCTTTAGATACACTCCCTTCAAAGACTATTATGGAGATGATTCTTTTACCTACAC CATGTCCGATGTAAATGGAAACCTTGCTACTGCAGCAGTGAACGTTTCAGTTCTCAGCATCCCACCTCAGTTTATTTCATTTCCTAGCGAAGTGCATGCA ACTGAAGACCAGATAAGTCCCCAGTTCGGGGGTTTCTCTGGGTTTAAGGTAAGATATTCAGAATCAGCTGAGGATATTACTGTCACTCTTGGTACATGGT CTGGTTCTGTGCTTTTGTCCCCTATGTTAATGCAGTTTTTCCAGCCCATATCTGGAAAACTTTCTGTGGAGAAAAGGGAGGAAGGTGGAGCAAATAGTTT GATGTTGAAGGGCTGTGTTGATGTGATCAATTTAGCACTTCAATCAGTTCAGTATATTGGAGATGAGAATTTCAGTGGCAACGACACTCTTCTTGTTTCA GCTAGCAACTTAATTGGGAAAACAAAGTTGAACGTTCCAGTCATCGTAGAACCTATGAATGATCCTCCTTTCATTAATGTCCCTAAATACATTATTTTAA AGAAGCATGGAGACGAGTCCCTCATCTTTGATAAAAACAGAGACGACTTTGAGTTCTCTGTTGGAGATCCAGACCTTGCCAACTATCCTGGCGGCGAGTC GCAGTTTATATTTGCATTTTCCATAGAAGTTGATATCGGATTTCTGGAAACTGTTCTACCAGCTGAGCTTAGCCTCACAACTGAACTGAAGCTGCAGAGT AGTCATATGTGGCAACCTCTTCAGACATATGTTACTATCTCAAAGCACTTTGTTGTCAGAGCTAGTGGAGTCCGATTCCGAGGAACAGTGAATGATTGCA ATAGCGTTCTACAACAGTTGGCATATAAGGGTGGAGAGCAAGTTGCTGTCTTGACGGTGAAACTAAATGATATGGGACATTATGGCTGTTCATCAGACTG TGTTGAAAAGATTTCGGTACCAATGTTTGCCAAGGCAACTATCAGTCTGGTCCAGGGAAAAACAATGGGCTTATTGGCATCTCAAAGCATAGGAATAGCC GTCATCCTTGAATTTATCATCGTGTCCAGCCTCGGAGCAATGCTCTTGTTCTTCACATGCAAATGTGCAGTACTTCTTGTGCATGAGAGGCGCTGGAACC CAGAGATAACAAAAGCAGATAAATCAGAGGTCCAAATTGTGGGTATTTCCTAG
AA sequence Show only first row Show all	>Lus10025556 pacid=23145065 polypeptide=Lus10025556 locus=Lus10025556.g ID=Lus10025556.BGIv1.0 annot-version=v1.0 MAGAFNILIVDDRFKVLDSSLHYTVSPGRIYPSACIATWMDLMSEFTAGSKARIFIVPRDAFGNNVTSIGEDLTPHNFTVSVLYGNGFLASLPNITCISW NHSDSIFVEFLAEKAGTFVLDVQGGNQTLNGCPLPFKVNPGPLDAQNCRGVWKVETNVWQIYSKMEIFIYQQDKYGNIVPGSYEFDADVIEKETHMLVPV ADLHFEEVLPGIQLLSFGLYEPGSFLLTISDFNHSTNISAMPFEYTVFIGYCDSSASIVNGTGLNDSLAGETARFSLYLVDTFQYPSFVEIESIRVQIVR ENDSYSVQPSIFPIVNGNGSTDTLRYDAIGQLEISPAPSVDLSRMYARRRNVLASVYNVVYTPERSGTYEIFVFCGNILLNNGHSFKKEVKPGDVDLSLS GVVSYVSKVAKIIQNEVVVQLMDSFRNPVPLLQSRLKLESASFNSSGFSAGMFNDYNDGSYTCGYMLKTVGTYEICVSFDGQRFSTCPIMVNAYGGEFFP RACDDYVSVSEDESVAFDVLGNDYFAGNNASITQFSKPGRGSLLLNGHVFRYTPFKDYYGDDSFTYTMSDVNGNLATAAVNVSVLSIPPQFISFPSEVHA TEDQISPQFGGFSGFKVRYSESAEDITVTLGTWSGSVLLSPMLMQFFQPISGKLSVEKREEGGANSLMLKGCVDVINLALQSVQYIGDENFSGNDTLLVS ASNLIGKTKLNVPVIVEPMNDPPFINVPKYIILKKHGDESLIFDKNRDDFEFSVGDPDLANYPGGESQFIFAFSIEVDIGFLETVLPAELSLTTELKLQS SHMWQPLQTYVTISKHFVVRASGVRFRGTVNDCNSVLQQLAYKGGEQVAVLTVKLNDMGHYGCSSDCVEKISVPMFAKATISLVQGKTMGLLASQSIGIA VILEFIIVSSLGAMLLFFTCKCAVLLVHERRWNPEITKADKSEVQIVGIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	1.0	0.8823
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	6.5	0.8621
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	8.8	0.8177
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	9.8	0.8497
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	11.3	0.8796
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	11.3	0.8452
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	11.7	0.8739
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	13.0	0.8530
					Lus10019215 [exp]	18.3	0.8299
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	19.0	0.8572

Compare expression of checked genes

Lus10025556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.