Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43370 333 / 8e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G50670 92 / 2e-20 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT1G53720 63 / 1e-10 ATCYP59, CYP59 cyclophilin 59 (.1) AT3G19130 57 / 6e-09 ATRBP47B RNA-binding protein 47B (.1) AT3G46020 53 / 6e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 54 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G74230 55 / 2e-08 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G20930 55 / 4e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21660 52 / 4e-08 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G23830 51 / 7e-08 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027015 [exp] 501 / 5e-180 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026026 [exp] 96 / 1e-21 AT3G50670 470 / 4e-164 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10014317 [exp] 96 / 1e-21 AT3G50670 466 / 2e-162 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10031772 [exp] 67 / 6e-12 AT1G53720 639 / 0.0 cyclophilin 59 (.1) Lus10031194 [exp] 66 / 2e-11 AT1G53720 640 / 0.0 cyclophilin 59 (.1) Lus10014802 [exp] 59 / 1e-09 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 59 / 2e-09 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 52 / 3e-08 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10015146 [exp] 51 / 6e-08 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033400 [exp] 363 / 1e-125 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G026900 [exp] 97 / 3e-22 AT3G50670 322 / 6e-106 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G124300 [exp] 96 / 1e-21 AT3G50670 357 / 8e-120 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G097500 [exp] 64 / 5e-11 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.011G130300 [exp] 57 / 1e-09 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 56 / 1e-09 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G236300 [exp] 54 / 4e-09 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.008G022200 [exp] 57 / 8e-09 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 55 / 2e-08 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 53 / 2e-08 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025557 pacid=23145128 polypeptide=Lus10025557 locus=Lus10025557.g ID=Lus10025557.BGIv1.0 annot-version=v1.0 ATGAGCGGAAGCGGCCGCGGGAACAACGTCAACTCGGTATTCTACGCCGAGTCGTACCACCCCATTCAAGCCGGGAGCATCGACGGCACCGACGTCCTTC CTCACGACAACGGCGTTTACCGCGCTCACCTCTGCTCCACCGCCGGCCTCTATGACCCATTGGGCGACCCCAAGGTCACCGGCGATCCCTACTGTACTCT CTTCGTCGGCCGCCTCTCGCATTTCACCGACGAGCAAACGCTTCACAAGGCAATGAGCAAGTACGGTGAGGTGAAGAATTTGAGGGTGGTCAGAGACATT GTAACTGGTGCCTCACGTGGCTATGCTTTTGTTGAATTCGAAACTGAAAGGGAGATGCTTCGTGCATACAAGGATGCTCATCGTTCCTATATCGATGACT CAGAAGTAATTGTTGATTACAACAGGCAGCAGCTGATGCCAGGGTGGATCCCAAGAAGGTTAGGAGGTGGCCTTGGTGGCAAGAAAGAGTCTGGACAGCT CCGGTTTGGTGGACGAGAAAGACCATTTCGAGCTCCTCTACGACCAATTCCATACGACGAGTTGAAGAAGCTTGGGATTCCTCCACCCCCTGAAGGAAAT TATATGTCACGGTTCGAGGTTCCATCACCACCGAGAAGGAACCGTAGTTCTAAAAACGAGGAAAAAGGTAGACATCTTAAGAAGATCTCTATCGAAGATA AAGAACGTAGCCGTAGAAGTCAAAGTCAGGGGAAGGAAGAAGGGTACAGCGGAAGAAGCTCCAGACGGCATTCTGAGGTTAGGGAAGAGCATGGACACAA GAGGAGCTCTGTCGACAGGGATGAATACTACTACTATGACAAGGGTCGACATAGGGACGCGGAAGAGCCTTACCATGGGAGGAGATCTATCGAGTCGGAG AGCAGGAAGAGCTCGAAGGATAAAGATGACGAAAGGTCGTATTGGGGCAGGAAGCATGATAGTCATCGGTCTGAGAAGCACAAAAGGAAGAGATCTAGTA GTAGAGATTATGAGGGTTGA
AA sequence Show only first row Show all	>Lus10025557 pacid=23145128 polypeptide=Lus10025557 locus=Lus10025557.g ID=Lus10025557.BGIv1.0 annot-version=v1.0 MSGSGRGNNVNSVFYAESYHPIQAGSIDGTDVLPHDNGVYRAHLCSTAGLYDPLGDPKVTGDPYCTLFVGRLSHFTDEQTLHKAMSKYGEVKNLRVVRDI VTGASRGYAFVEFETEREMLRAYKDAHRSYIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDELKKLGIPPPPEGN YMSRFEVPSPPRRNRSSKNEEKGRHLKKISIEDKERSRRSQSQGKEEGYSGRSSRRHSEVREEHGHKRSSVDRDEYYYYDKGRHRDAEEPYHGRRSIESE SRKSSKDKDDERSYWGRKHDSHRSEKHKRKRSSSRDYEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	0	1
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	1.0	0.9646
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	4.9	0.9252
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	9.9	0.9148
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	14.9	0.8884
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	15.7	0.8964
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	16.3	0.9038
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	16.6	0.9276
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	17.7	0.9201
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026485 [exp]	21.0	0.9122
					Lus10005797 [exp]	24.5	0.8822

Compare expression of checked genes

Lus10025557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.