Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31600 203 / 7e-64 unknown protein AT3G53860 189 / 1e-58 unknown protein AT1G05860 188 / 3e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026896 [exp] 365 / 3e-127 AT2G31600 241 / 5e-79 unknown protein Lus10003417 [exp] 228 / 7e-74 AT2G31600 157 / 2e-47 unknown protein Lus10027016 [exp] 204 / 3e-66 AT2G31600 131 / 2e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126300 [exp] 258 / 1e-85 AT2G31600 244 / 2e-80 unknown protein Potri.017G035200 [exp] 249 / 8e-82 AT2G31600 238 / 2e-77 unknown protein Potri.010G180200 [exp] 197 / 9e-62 AT1G05860 180 / 1e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025558 pacid=23145082 polypeptide=Lus10025558 locus=Lus10025558.g ID=Lus10025558.BGIv1.0 annot-version=v1.0 ATGACGGCGTCCGCCAAGCACCACCATAGCCAACCACCGTCCACCTCCAAACCACCCCGCAATAATCCCAACGTACCCAGCGCCGTCGCTCTTCCCGCAC CTCCTCAAACCACAAACCCCAACCCTACCTCCTCCGCCGCCGCCGCTACATCGCCGATCACTCTCTACGATAGGAATCACCCGATCTCCCACGCCAAAAT CCTCACCCGCCAAGAATTGCTGAAGCGGAGGTCTCACCATCTGAATCAGCTCCTGCAATGCTACAAGGACCATTACTGGGCTCTAATGGAGGAGGTCAAG GTCCAGCACCGAGAGTACTACTGGAAGTACGGCGTCAGCCCTATCAAACACGATCAGAAGAGAGAGGATCCGGGGTCGAATTTCGAGAACGGCAACATTG TGGAGGTGATGGATGAGAGTAACAATTTCGGGAATGGCATCGGAGGCAATTTGCCTTGCAACAATAATAATAGTAATTCGAGCAAAGGCGAAATTGAATC GAAGAATAGTCAGAGCAGTAAGTGTACGGTTAATGGTTGTAAGTTGAAGGCCATGGCTTTGACTAGCTTCTGTCACCTTCATATAGTCTCCGATCCCAAC CAGAAGCTCTATAAGGCCTGCACTTTTGTTATCAAGAGTGCTGCGGCAAAACCAATAACCTGTGGAAAGCCTATACTGCAAACAACCGTTCCTTGTTTTT GTACCCTCCACTTCCAAAAGGCTCAGCAGCATGTGACTCGCGCATTGAAGAAAGCAGGTCTTAACGTTACTGCATCAAGTAAACTTGCTCCTAAGTTTCA TGTCATAGTTGCAGAATATGTGAACCAAATTCAGGCCAAGAGAAGAGCTGCAAAAAGAGCGAAATTTAACAAGGATGGCAAAGGTGCGGGTGGTGGTAAC TGCTCAGTGGTCAAATCTTGA
AA sequence Show only first row Show all	>Lus10025558 pacid=23145082 polypeptide=Lus10025558 locus=Lus10025558.g ID=Lus10025558.BGIv1.0 annot-version=v1.0 MTASAKHHHSQPPSTSKPPRNNPNVPSAVALPAPPQTTNPNPTSSAAAATSPITLYDRNHPISHAKILTRQELLKRRSHHLNQLLQCYKDHYWALMEEVK VQHREYYWKYGVSPIKHDQKREDPGSNFENGNIVEVMDESNNFGNGIGGNLPCNNNNSNSSKGEIESKNSQSSKCTVNGCKLKAMALTSFCHLHIVSDPN QKLYKACTFVIKSAAAKPITCGKPILQTTVPCFCTLHFQKAQQHVTRALKKAGLNVTASSKLAPKFHVIVAEYVNQIQAKRRAAKRAKFNKDGKGAGGGN CSVVKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31600			unknown protein		Lus10025558 [exp]	0	1
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	4.7	0.7030
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005011 [exp]	9.7	0.6879
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10015145 [exp]	14.2	0.6572
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	14.9	0.6835
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	18.6	0.6630
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	32.3	0.6292
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	33.6	0.5921
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	35.1	0.6615
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	42.4	0.6311
					Lus10015031 [exp]	46.7	0.5772

Compare expression of checked genes

Lus10025558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.