Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43360 611 / 0 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027018 [exp] 708 / 0 AT2G43360 620 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126400 [exp] 617 / 0 AT2G43360 609 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1) Potri.017G033300 [exp] 616 / 0 AT2G43360 606 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0036 [flax] [poplar] PF06968 [flax] [poplar] BATS Biotin and Thiamin Synthesis associated domain
Representative CDS sequence Show only first row Show all	>Lus10025559 pacid=23145095 polypeptide=Lus10025559 locus=Lus10025559.g ID=Lus10025559.BGIv1.0 annot-version=v1.0 ATGCTGTCTGCTCGTTCAATCTTCCGACCTCTCCGCCATTCCAACCTCTCCATTTCATCCGTACATTATTCATCGTCTTCAGCTGCTGCAATTGAAGCCG AGAGATCCATCCGAGAAGGCCCCCGCAACGATTGGAGTCGTCCTCAGATCAACGGCGTTTACCAATCCCCTCTCCTCGATCTCCTCTTCCATGGCGCTCA AGTTCATAGACACGCGCATAACTTTAGGGAAGTTCAGCAGTGCACTCTTCTTTCTATCAAGACCGGTGGGTGCAGTGAGGACTGTTCTTACTGCCCTCAG TCCTCCCGTTACAGCACCGGTCTTAAAGCTCAGAAGCTCATGGGCAAAGATGCCGTTCTCGAGTCTGCCAAAAGGGCGAAAGAGGCTGGAAGCACGCGTT TTTGTATGGGTGCTGCATGGAGAGATACAGTAGGAAGGAAGACCAACTTCAACCAGATATTAGATTATGTAAAAGAAATCAGGGATATGGGGATGGAGGT CTGCTGCACCTTGGGCATGCTAGAGAAGGAGCAGGCTGCAGAACTCAAGAAGGCTGGCCTTACAGCATATAATCATAATCTTGATACCTCGAGAGAGTAT TATTCCAAAGTTATTACTACAAGAACATATGATGAACGTCTGAAGACCCTTGAGCATGTCCAGGAAGCTGGAATTCATGTCTGCTCAGGAGGCATAATCG GCCTGGGAGAAGCAGAGGAAGACAGAGTTGGTCTGTTGCATACATTAGCAACACTTCCTAAGCACCCAGAGAGCGTTCCTGTTAATGCTCTTGTTGCAGT GAAAGGCACACCTCTGGAAGACCAGAAGCCTGTGGAAATCTGGGAAATGGTACGAATGATAGCCACTGCACGCATAGTGATGCCAAAAGCAATGGTGAGA TTATCAGCAGGGAGAGTGAGTTTCTCAATGGCCGAGCAGACGCTTTGCTTTCTGGCCGGTGCAAATTCGATCTTCACAGGGGAGAAGCTGTTGACTACTC CCAACAATGATTATGATGCCGACCAACAAATGTTCAAAGTCCTTGGGTTGATCCCAAAGCCACCCAGTTTTGGCGAGGAAGAACAAGAGCTGAAAGTGGC TTCTTCCTCAAACTAA
AA sequence Show only first row Show all	>Lus10025559 pacid=23145095 polypeptide=Lus10025559 locus=Lus10025559.g ID=Lus10025559.BGIv1.0 annot-version=v1.0 MLSARSIFRPLRHSNLSISSVHYSSSSAAAIEAERSIREGPRNDWSRPQINGVYQSPLLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ SSRYSTGLKAQKLMGKDAVLESAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILDYVKEIRDMGMEVCCTLGMLEKEQAAELKKAGLTAYNHNLDTSREY YSKVITTRTYDERLKTLEHVQEAGIHVCSGGIIGLGEAEEDRVGLLHTLATLPKHPESVPVNALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVR LSAGRVSFSMAEQTLCFLAGANSIFTGEKLLTTPNNDYDADQQMFKVLGLIPKPPSFGEEEQELKVASSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	1.7	0.9546
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	3.5	0.9385
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	4.6	0.9019
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	5.5	0.9169
AT5G37010			unknown protein		Lus10020782 [exp]	6.0	0.9246
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	7.0	0.9153
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	8.0	0.9065
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	10.2	0.8929
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	12.0	0.8554
AT3G12870			unknown protein		Lus10031776 [exp]	14.0	0.9174

Compare expression of checked genes

Lus10025559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.