Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 52 / 2e-07 F-box/RNI-like superfamily protein (.1.2) AT3G59170 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT5G22730 49 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00315 49 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 49 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58900 49 / 1e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT1G78760 49 / 2e-06 F-box/RNI-like superfamily protein (.1) AT1G67390 48 / 2e-06 F-box family protein (.1) AT1G51370 48 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027019 [exp] 407 / 1e-145 AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025561 [exp] 210 / 1e-67 AT3G49150 52 / 2e-07 F-box/RNI-like superfamily protein (.1) Lus10021833 [exp] 188 / 2e-59 AT3G42770 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027020 [exp] 151 / 3e-45 AT1G51370 58 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10015246 [exp] 133 / 1e-36 AT5G44960 44 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034559 [exp] 107 / 1e-29 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10042304 [exp] 55 / 4e-09 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10042477 [exp] 53 / 8e-08 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 50 / 5e-07 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 55 / 2e-08 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 50 / 6e-07 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 50 / 6e-07 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.014G163866 [exp] 48 / 2e-06 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.013G146800 [exp] 48 / 4e-06 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 47 / 7e-06 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 46 / 1e-05 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.014G039700 [exp] 46 / 1e-05 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 45 / 2e-05 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.002G132400 [exp] 45 / 4e-05 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025560 pacid=23145125 polypeptide=Lus10025560 locus=Lus10025560.g ID=Lus10025560.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGGAGGAGGATCTTTTCCAGAAGTTACCGGAGGAATTACTCACCAAGATAACGGGGTTCTTGCAGCTGAAAGACGCCGCAAGAACAAGCA TTCTTTCACGGCGGTGGCGCTGCGCCTGGAGAAAATCGCCAAATCCTCACTTCGACGGCAACAAAACAACAAAATTCAGGAGCAACGGCTATCCGATCTC CTGTTTCCAAAGCGTCCACCATTTCTTCAATTGGATCGATAAGATCATCGCCCAGCGGCACGACGATAACAACCTCCTCCGTATCGAATCGTTAGGTCTC AACTTCAACACAGATGAAGAAAACAACTACGGGTGGATCGAATTGAGGAAATCATCGGACGATTCTGCTATAATCGGGAGCTACAGAGTCGTGTCTTTCT CGTCGAATTCTTCCCCGATTCCAGGAATGATCAGCAGCCTGGCCGATCTGCTGTCGAGGCAGCCGAATCTGATTCTCAGACGATTGACGCTGCGGAACTG TGATATGGATACCCTAGAGACTCGGATATTCACCGGTGGATTGGGCAACAGTTTCAAGTCGCTGGAATCGCTGGATATGCAATGCGGTGGGAAATGGATA GAGTTGGGATTGGTGTCGAGGTTGATTGAAAGTGTTCCGTCGCTGAAGGATATTACATTGGAGGACTGCAATATTGACGTCGGCGACGGACTTTCCGTCG AGGGGAGTAACATTAAGCTTAACTTCGTTCGTTGTACTCTGCACTGA
AA sequence Show only first row Show all	>Lus10025560 pacid=23145125 polypeptide=Lus10025560 locus=Lus10025560.g ID=Lus10025560.BGIv1.0 annot-version=v1.0 MEEEEEDLFQKLPEELLTKITGFLQLKDAARTSILSRRWRCAWRKSPNPHFDGNKTTKFRSNGYPISCFQSVHHFFNWIDKIIAQRHDDNNLLRIESLGL NFNTDEENNYGWIELRKSSDDSAIIGSYRVVSFSSNSSPIPGMISSLADLLSRQPNLILRRLTLRNCDMDTLETRIFTGGLGNSFKSLESLDMQCGGKWI ELGLVSRLIESVPSLKDITLEDCNIDVGDGLSVEGSNIKLNFVRCTLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10025560 [exp]	0	1
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	11.8	0.6922
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	97.5	0.6077
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	112.9	0.5826
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	126.7	0.5745

Compare expression of checked genes

Lus10025560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.