Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59250 52 / 2e-07 F-box/RNI-like superfamily protein (.1) AT3G49150 50 / 6e-07 F-box/RNI-like superfamily protein (.1) AT5G22610 50 / 8e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59150 47 / 5e-06 F-box/RNI-like superfamily protein (.1) AT1G49610 47 / 8e-06 F-box family protein (.1) AT3G42770 46 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G51370 46 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G02910 46 / 1e-05 F-box/RNI-like superfamily protein (.1.2) AT3G52670 45 / 2e-05 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT5G41840 45 / 2e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027019 [exp] 236 / 9e-78 AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025560 [exp] 228 / 1e-74 AT5G22610 53 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10021833 [exp] 216 / 6e-70 AT3G42770 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10015246 [exp] 138 / 3e-38 AT5G44960 44 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027020 [exp] 119 / 1e-32 AT1G51370 58 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10034559 [exp] 97 / 8e-26 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10040760 [exp] 52 / 3e-07 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 49 / 2e-06 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10006342 [exp] 47 / 9e-06 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024600 [exp] 48 / 3e-06 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G098700 [exp] 48 / 4e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.014G039700 [exp] 47 / 7e-06 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 45 / 4e-05 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.014G163866 [exp] 44 / 4e-05 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.010G134200 [exp] 43 / 0.0001 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 43 / 0.0002 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 43 / 0.0002 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.015G002001 [exp] 41 / 0.0005 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 41 / 0.0006 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025561 pacid=23145031 polypeptide=Lus10025561 locus=Lus10025561.g ID=Lus10025561.BGIv1.0 annot-version=v1.0 ATGGAGCATGACGGCGACCTTTTCGAGAAGCTACCCGAGGAGCTACTGACGAAGATAACCGGGTTCTTGCCGCTGGAAGAGTCAGCAAGAACCAGCGCCC TTCTCTCGAAGCGATGGCGGTACGCTTGGAGAGGAACCCCAAACCCTCACTTCGACGGCGCCGCCGCCACCAAATTCAGAAGCGACGGCCGCCGTCCGAT CTTCTACTTCAAAACCGTCGACCACTTCTTCAATTGGATGGACGAGATGATCACACGTAAGCAGCGGGAGGAGGATGGTAAAACCGACTTTTACATCGGG TCGTTGGGTCTCAACTTCAATCCGGACGACGGAGATGACAACTACGGGTGGATTGAATTGAGGAATTGGGACTCTGCTACTGCCGGGTACAGAGTTGTGT CTTTCTTGTCTTGTTCGTCGCCGACGGAGACAGCGGCGGCGGGGACGGTCGCTTTCAGAAGCTTGAGCGATGTGTTGTCCGGACGGCCGTATCTGTTGAA ACACCTGACGCTGCGGAACTGCGACGAGGAAACCCTGAAAAGCAGAGTAGTCGCCGCCGCTGCCGGCGACGGCAACGACAGTTTTAAGGGGCTGAGGTCG TTGGTTTTGCAATGTGGTGGGAAATCGGTGGATGTGGGATTGGTAGAAAGCTTGATCCGAGGTTTCCCGTCGGTGATGATCGTCACATTGGAGGATTGTT GCAGGTTTAGTCTTGCCGGTGATTTCCCGGTCCTCGTCGATAAAAGTCGGATTAAGCTGTCTCTGTCTCGGCAGAGGATAATCAGCGTTGCGTACGAAGA ATGA
AA sequence Show only first row Show all	>Lus10025561 pacid=23145031 polypeptide=Lus10025561 locus=Lus10025561.g ID=Lus10025561.BGIv1.0 annot-version=v1.0 MEHDGDLFEKLPEELLTKITGFLPLEESARTSALLSKRWRYAWRGTPNPHFDGAAATKFRSDGRRPIFYFKTVDHFFNWMDEMITRKQREEDGKTDFYIG SLGLNFNPDDGDDNYGWIELRNWDSATAGYRVVSFLSCSSPTETAAAGTVAFRSLSDVLSGRPYLLKHLTLRNCDEETLKSRVVAAAAGDGNDSFKGLRS LVLQCGGKSVDVGLVESLIRGFPSVMIVTLEDCCRFSLAGDFPVLVDKSRIKLSLSRQRIISVAYEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	0	1
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	2.2	0.9664
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	3.2	0.9589
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	3.5	0.9505
AT4G33740			unknown protein		Lus10020507 [exp]	4.5	0.9489
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	4.6	0.9508
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	5.5	0.9477
					Lus10015758 [exp]	5.7	0.9474
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	6.0	0.9375
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	7.9	0.9476
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	8.1	0.9239

Compare expression of checked genes

Lus10025561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.