Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05870 183 / 8e-59 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 181 / 2e-57 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 164 / 4e-51 Protein of unknown function (DUF1685) (.1) AT3G22690 100 / 2e-24 unknown protein AT5G28690 77 / 2e-17 Protein of unknown function (DUF1685) (.1) AT4G33985 77 / 2e-17 Protein of unknown function (DUF1685) (.1) AT3G50350 76 / 5e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT1G08790 74 / 2e-16 Protein of unknown function (DUF1685) (.1) AT3G04700 74 / 3e-16 Protein of unknown function (DUF1685) (.1) AT3G04710 75 / 2e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027022 [exp] 421 / 6e-152 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10006560 [exp] 98 / 2e-25 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 91 / 3e-23 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 90 / 6e-23 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 65 / 5e-13 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10002400 [exp] 62 / 7e-12 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10038023 [exp] 63 / 2e-11 AT2G46940 162 / 4e-49 unknown protein Lus10014064 [exp] 61 / 2e-11 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 57 / 3e-10 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126700 [exp] 209 / 1e-68 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 189 / 1e-60 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.013G042400 [exp] 93 / 3e-23 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 89 / 8e-22 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 88 / 8e-22 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 85 / 2e-20 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.009G101300 [exp] 68 / 3e-14 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 66 / 8e-13 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 56 / 4e-09 AT2G46940 111 / 4e-29 unknown protein Potri.004G059900 [exp] 45 / 1e-05 AT2G42760 99 / 6e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10025562 pacid=23145104 polypeptide=Lus10025562 locus=Lus10025562.g ID=Lus10025562.BGIv1.0 annot-version=v1.0 ATGGGAAGAATCGCTTCTGAGATCATCAATGGCGACGAATCAAACTCACCTTCTAGATTCTCTCCACAATCAGAACAACACTACCCATCCTTTCTAGGTA ACCAACCCCAGAATCAGACCCATGGCGGCGACGACGATGGGGCCGACGAAACCCTACAGATATGGGAGAAGCTCCAGAGATCCAACTCCGGCGCCGCTAA CGGCAGCACCATCATCGACAGGAGGCTGTCAAGGAAGAGAACCAACAGGAAGAACCAGGTCCTGCTAGAGGGCTATGTCGATCTTGCCGACGATGATTTG AAGAGGGGCAAGAGCTTGAACGACGACGATCTAGATGAGCTGAAGGGGTGTTTGGATCTGGGTTTTGGTGGATTCAGCTACGACGAGATCCCTGAGCTCT GCAACACTTTGCCTGCCCTCGAGCTTTGCTACTCGATGAGCCAGAAGTACCTTGATGACACCTCCTCCCAGAAAACACCACCTCCAAATGCTGCTGACGG ATCTTCCGATTCTTCTGATCTTACTCCTTCCGATCATCCCAGTCCTATTGCTAATTGGAAGATCTCCAGTCCTGGTGACCATCCGGAAGATGTGAAAGCA AGGTTGAAATATTGGGCACAGGCTGTTGCTTGTACTGTCAAATTATGCAGCTGA
AA sequence Show only first row Show all	>Lus10025562 pacid=23145104 polypeptide=Lus10025562 locus=Lus10025562.g ID=Lus10025562.BGIv1.0 annot-version=v1.0 MGRIASEIINGDESNSPSRFSPQSEQHYPSFLGNQPQNQTHGGDDDGADETLQIWEKLQRSNSGAANGSTIIDRRLSRKRTNRKNQVLLEGYVDLADDDL KRGKSLNDDDLDELKGCLDLGFGGFSYDEIPELCNTLPALELCYSMSQKYLDDTSSQKTPPPNAADGSSDSSDLTPSDHPSPIANWKISSPGDHPEDVKA RLKYWAQAVACTVKLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	6.0	0.8193
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	6.0	0.8008
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	10.2	0.7885
AT5G38060			unknown protein		Lus10009105 [exp]	11.8	0.7994
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	17.5	0.7960
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	18.4	0.7941
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	20.5	0.7541
AT2G42760			unknown protein		Lus10019924 [exp]	20.6	0.8059
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	21.4	0.7633
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	21.5	0.7936

Compare expression of checked genes

Lus10025562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.