Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11370 39 / 0.0008 RHA1A RING-H2 finger A1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027023 [exp] 137 / 2e-41 AT5G47610 89 / 1e-22 RING/U-box superfamily protein (.1) Lus10002194 [exp] 42 / 9e-05 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10025162 [exp] 39 / 0.0007 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147900 [exp] 42 / 0.0001 AT5G47610 123 / 1e-35 RING/U-box superfamily protein (.1) Potri.018G046900 [exp] 39 / 0.0007 AT5G20885 136 / 4e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025563 pacid=23144997 polypeptide=Lus10025563 locus=Lus10025563.g ID=Lus10025563.BGIv1.0 annot-version=v1.0 ATGACGCGGCATTGGGCCACCTCCGCCAATTTCCTTACAACAGCCGAGGCATCCTTAATCCAGTCTCCGCCGCCGGCGTCGTCAATACAAACAACCCACA ACACCTCCTCCGCACTCTCGCCGTCGGCCGCCACAATCTTGATCGTCCTCCTCTGCATCGTAATCTGCGTCGTGGCTCTCAACGCCGCCGTCCGCTGCTT CTTGGGCGGCGGCCGGACATCGTCGGCGGGGAGGAGAAGCGTGCCGGAGAGGAACAAGGAGAGCGTGGTGGCTAGTGTGGCGGTGGCGGAAGTGGCGTCG ACGGTGGTGTTTCGTGGTGGGGGCGGTGGTGAGGAGGAGGAGTGCTGTGCGATTTGCTTGGCGGAGTTTGAGGAAGGGGAGGAGGTTGAGGTGTTGGGGA ATTGCGGCCATGGGTTTCATAATCATTGTATTCAGCGGTGGTTTTTTATTTCTTCCAGTACGAATTGTTCGTGTCCGACTTGCCGGCGACCTTGTCTTCC GCCGCCGCCGAGTCAGCTAACTGACAACAGTACTGCTGATCACGAGCCATGA
AA sequence Show only first row Show all	>Lus10025563 pacid=23144997 polypeptide=Lus10025563 locus=Lus10025563.g ID=Lus10025563.BGIv1.0 annot-version=v1.0 MTRHWATSANFLTTAEASLIQSPPPASSIQTTHNTSSALSPSAATILIVLLCIVICVVALNAAVRCFLGGGRTSSAGRRSVPERNKESVVASVAVAEVAS TVVFRGGGGGEEEECCAICLAEFEEGEEVEVLGNCGHGFHNHCIQRWFFISSSTNCSCPTCRRPCLPPPPSQLTDNSTADHEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	0	1
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	2.6	0.8657
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	3.5	0.8618
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	4.2	0.8551
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	4.5	0.8417
AT5G44005			unknown protein		Lus10003609 [exp]	8.4	0.8229
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	12.2	0.7662
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	12.4	0.8103
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	14.0	0.7936
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	15.0	0.8195
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	15.0	0.7909

Compare expression of checked genes

Lus10025563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.