Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46680 276 / 2e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 170 / 5e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64580 160 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 162 / 8e-44 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16640 157 / 4e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 158 / 2e-42 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 154 / 3e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 154 / 4e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 153 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 152 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039036 [exp] 511 / 1e-180 AT5G46680 399 / 1e-135 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027024 [exp] 276 / 4e-92 AT5G46680 153 / 5e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 163 / 4e-44 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 163 / 1e-43 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 159 / 2e-42 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 153 / 2e-40 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 151 / 7e-40 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 151 / 7e-40 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 144 / 7e-38 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006500 [exp] 327 / 8e-109 AT5G46680 444 / 1e-153 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 167 / 3e-46 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 167 / 4e-46 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 166 / 1e-45 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 164 / 6e-45 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 164 / 7e-45 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 162 / 2e-44 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 161 / 5e-44 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 161 / 7e-44 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 161 / 8e-44 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025564 pacid=23145124 polypeptide=Lus10025564 locus=Lus10025564.g ID=Lus10025564.BGIv1.0 annot-version=v1.0 ATGTTACAAACCTTTCGATTGAATGAACGCGTAAGCTCCTTCTGCAAGACTAAGCAATTGAAACGAGCCGAGACGGTATATATTGATGGGATTAGACGGG GAGTGCTTCCTGACGTCGTCACTTTTAATACGCTCATCAACGCCTACTGTCGTCTCGTCAGCTTCGAGGCTGCTTATGCTCTTCTCGCTAGAATGGAAAA AACTGGGATTGGACCAGATGTGGTATCTTTCAATACTTTGATCGCCGGTGCTACTAGAAGCCGCTTGTTCGACAAGGCCACCTACCTGTTCGAGGAGGAA ATGCCTCAAAGAAACATTTCCCCTGATATTTTGACCTTGAACACTATGATGCACTCTTTCTTTCAGCAGAGAAAGACCGGAGAAGCTTATAAGATCTTGC CAATGATTGAATTACGGGGGTTAGAACCTAAACCTGCTACTTATAATATTTTGATCAATGGTCTCTGCAAGAATGGCTGGGAAATTGGGGCTACTAGACG GGTTATTCGGGAATTTGAGGCTTCTGGGAACGTTGCCAATGCTATAACTTATACCACGATGATGAATTGTTGGTTTAAGTCTAAGAAATTCAAGCAAGGT TTCAGGGTGTTGGAAGAGATGAAGAGTAAAGGGTATACGTCTGATGGCTTTGGGTATTGCACGGCTATGGGTGCTCTGCTCAAGGTTGGTAAAGTTGAAG AGGCAGCTAGGTTCAAGGATGAGATGATAAACAATGGTATTGAGCTTGATTTGGTGTCGTATAATACACTTCTGAATCTCTCACGGAAAGAAGGTAAAAT GGAAGAATTTTATTATTTGAGTGACCAAATCAAAAAGAGTGGTTTGGAACATGATAAATACACACATACTATATTTGTGGACGTATTGTGCAAGGAAGGT TATATTGAGCGGGCACAACGACGCTTGAAGGAAATGAATACGATGGGTTTTGATTCCACTTCAGCTGCTACAAACTCTGTTATTGATGGATTAGTTAAAG CGGGTAATTATGAGCTTGCTACAAAAATGTTGGCATCGATGAAGAATGACGAAGGAGATGGCTGTGGCGGCCTCGTTCAGGTGGATCCTGCAATCCACAA GGATGTTCTCAAGGCGGCTCGTTTCTACTCCGAAGGCCTGGATTTCACCGTCAATGTCTGCACCCTATGCTGGGCTGAACTTCATTCGAGTCCTCTGAAG CTCGCCCTCATGCAATCTACCAAGTAA
AA sequence Show only first row Show all	>Lus10025564 pacid=23145124 polypeptide=Lus10025564 locus=Lus10025564.g ID=Lus10025564.BGIv1.0 annot-version=v1.0 MLQTFRLNERVSSFCKTKQLKRAETVYIDGIRRGVLPDVVTFNTLINAYCRLVSFEAAYALLARMEKTGIGPDVVSFNTLIAGATRSRLFDKATYLFEEE MPQRNISPDILTLNTMMHSFFQQRKTGEAYKILPMIELRGLEPKPATYNILINGLCKNGWEIGATRRVIREFEASGNVANAITYTTMMNCWFKSKKFKQG FRVLEEMKSKGYTSDGFGYCTAMGALLKVGKVEEAARFKDEMINNGIELDLVSYNTLLNLSRKEGKMEEFYYLSDQIKKSGLEHDKYTHTIFVDVLCKEG YIERAQRRLKEMNTMGFDSTSAATNSVIDGLVKAGNYELATKMLASMKNDEGDGCGGLVQVDPAIHKDVLKAARFYSEGLDFTVNVCTLCWAELHSSPLK LALMQSTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10025564 [exp]	0	1
AT3G59390			unknown protein		Lus10007819 [exp]	5.4	0.7708
AT4G12010			Disease resistance protein (TI...		Lus10017419 [exp]	7.0	0.7883
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	31.9	0.7895
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	35.2	0.7720
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	51.9	0.7659
AT4G10930			unknown protein		Lus10023068 [exp]	81.0	0.7737
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10026448 [exp]	85.3	0.7578
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	89.9	0.7475
AT1G52320			unknown protein		Lus10025777 [exp]	101.2	0.7643
AT1G03970	bZIP	GBF4	G-box binding factor 4 (.1)		Lus10042810 [exp]	116.1	0.7547

Compare expression of checked genes

Lus10025564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.