Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43330 679 / 0 ATINT1 inositol transporter 1 (.1) AT1G30220 353 / 9e-116 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 326 / 2e-105 ATINT3 nositol transporter 3 (.1) AT4G16480 319 / 1e-102 ATINT4 inositol transporter 4 (.1) AT4G36670 199 / 1e-57 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT5G16150 195 / 6e-56 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT3G18830 192 / 1e-54 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 190 / 3e-54 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G18480 188 / 1e-53 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 187 / 5e-53 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027026 [exp] 870 / 0 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10043120 [exp] 576 / 0 AT2G43330 593 / 0.0 inositol transporter 1 (.1) Lus10028118 [exp] 360 / 2e-118 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 360 / 3e-118 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10010501 [exp] 333 / 8e-108 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 327 / 1e-105 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 323 / 7e-104 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 315 / 5e-101 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 313 / 2e-100 AT4G16480 769 / 0.0 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126800 [exp] 746 / 0 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 723 / 0 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.006G015300 [exp] 337 / 9e-110 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 333 / 7e-108 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 328 / 4e-106 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032400 [exp] 291 / 7e-97 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.017G032600 [exp] 234 / 6e-75 AT2G43330 0 / 1 inositol transporter 1 (.1) Potri.013G135200 [exp] 203 / 5e-59 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 201 / 4e-58 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G133340 [exp] 192 / 1e-57 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10025565 pacid=23145019 polypeptide=Lus10025565 locus=Lus10025565.g ID=Lus10025565.BGIv1.0 annot-version=v1.0 ATGACGATCGGCTCGACGCCAGGGAGCTCGGGGTACCTGGATTTGTTTCCGGAGAGGAGAATGTCTTATTTCAGTAATGCCTACGTCTTAGGGTTGACTG TTATTGCTGGAATCGGCGGTCTCCTCTTTGGCTATGATACTGGTGTTATTTCAGGGGCCCTTCTCTACATTAGAGATGAATTTGAGGAGGTCAATCGAAG CAGCTTCCTTCAGGAAACAATAGTAAGCATGGCACTAGTTGGTGCTATGATAGGAGCTGCATCAGGGGGTTGGATTAATGACGCGTATGGGCGCAAGAAG GCTACACTTCTTGCTGATGTTGTCTTTGCTTCCGGTTCCATTGTTATGGCTGCTGCACCAAATCCTTATGTGCTCATAGTCGGACGACTTTTAGTCGGAC TTGGTGTTGGTGTTGCATCTGTTACTGCTCCTGTGTATATTGCTGAAGCATCTCCATCAGAAGTGAGGGGAGGATTAGTGAGCACCAATGTTCTTATGAT AACCGGTGGACAGTTCCTTTCCTACCTTGTAAATCTTGCCTTTACAGAGGTTCCAGGAACCTGGCGGTGGATGCTTGGAGTTGCAGCTGTGCCTGCTATC ATCCAGTTCTGCCTAATGCTCTTAATGCCAGAGTCTCCTAGATGGCTTTTCATGAAGAATGAGGAAACCAAAGCCATTGAAATACTTGCTAGGATATACG ACATTGACAGGTTGGAGGATGAGATCGAATCCCTTGCTGCTGCTTCTCTCGAGGACCGTCAGGAAGAAAACAAAGTCTCATACTTTGATGTTTTCAAAAC TAAAGAAATTAGGCTTGCATTTCTTGCGGGTGCCGGTCTACAGGCATTCCAGCAGTTTACCGGTATAAACACGGTCATGTACTACAGCCCGACAATTGTC CAAATGGCCGGCTTCTCTTCGAACCAATTAGCTCTCCTCCTTTCCTTAGTTATTGCGGCCATGAACGCTGCCGGAACCATTGTAGGCATCTACATGATCG ACCATTTCGGAAGAAAGAAGCTCGCCCTCTCAAGCTTAGCTGGTGTGATCGTATCACTTACAATACTCTCCGGTGCATTCTACGGCCAATCAACAGAACC CTCGAACGGACTTTTTGGATGGCTCGCGGTGATAGGTTTGGCCCTTTACATCGCCTTCTTCTCTCCCGGAATGGGACCCGTACCGTGGACCGTCAACTCG GAGATCTATCCTTCCCAGTATAGAGGGCTCTGCGGCGGGATGTCAGCGACTATCAACTGGATTTCGAACTTGATAGTGGCGCAGAGCTTCCTCTCGATAG CCGAAGTTGCCGGTGCAGCTACGACTTTCTTGATCCTGGCCTGCATTGCTGTGGCAGCGGTTGTGTTTGTGGCCACTTTTGTTCCGGAGACCAAGGGGTT GACGTTTGTGGAAGTGGAGCAGATATGGAAGGAACGAGCTTACGGGAGCGGGTACAACTCCGAAAGCCTTCTCGAACGAGGGGATGATGACGAAACTTCG TGA
AA sequence Show only first row Show all	>Lus10025565 pacid=23145019 polypeptide=Lus10025565 locus=Lus10025565.g ID=Lus10025565.BGIv1.0 annot-version=v1.0 MTIGSTPGSSGYLDLFPERRMSYFSNAYVLGLTVIAGIGGLLFGYDTGVISGALLYIRDEFEEVNRSSFLQETIVSMALVGAMIGAASGGWINDAYGRKK ATLLADVVFASGSIVMAAAPNPYVLIVGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGVAAVPAI IQFCLMLLMPESPRWLFMKNEETKAIEILARIYDIDRLEDEIESLAAASLEDRQEENKVSYFDVFKTKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV QMAGFSSNQLALLLSLVIAAMNAAGTIVGIYMIDHFGRKKLALSSLAGVIVSLTILSGAFYGQSTEPSNGLFGWLAVIGLALYIAFFSPGMGPVPWTVNS EIYPSQYRGLCGGMSATINWISNLIVAQSFLSIAEVAGAATTFLILACIAVAAVVFVATFVPETKGLTFVEVEQIWKERAYGSGYNSESLLERGDDDETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	1.7	0.9288
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	1.7	0.8790
AT5G54470	CO		B-box type zinc finger family ...		Lus10039727 [exp]	2.2	0.8684
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	4.9	0.8401
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	6.3	0.8444
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003158 [exp]	8.0	0.8874
AT3G11690			unknown protein		Lus10016197 [exp]	11.3	0.8761
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	15.3	0.8359
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	17.9	0.7776
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	22.4	0.8508

Compare expression of checked genes

Lus10025565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.