Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31510 783 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G65430 757 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT1G05890 753 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 575 / 0 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 571 / 0 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 499 / 7e-174 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 329 / 1e-106 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT5G63750 207 / 1e-59 ATARI13, ARI13 ARABIDOPSIS ARIADNE 13, ARIADNE 13, RING/U-box superfamily protein (.1) AT4G34370 207 / 3e-59 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT3G27710 205 / 7e-59 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027027 [exp] 1045 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 798 / 0 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 705 / 0 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 441 / 8e-150 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10040508 [exp] 196 / 4e-55 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 190 / 9e-53 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 188 / 5e-52 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10000131 [exp] 176 / 1e-51 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) Lus10026319 [exp] 173 / 6e-47 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032000 [exp] 874 / 0 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 840 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.010G180600 [exp] 814 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.008G077100 [exp] 810 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 545 / 0 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 526 / 0 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 194 / 2e-54 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 194 / 2e-54 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 76 / 7e-15 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G214201 [exp] 69 / 4e-14 AT1G65430 66 / 9e-14 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10025566 pacid=23145138 polypeptide=Lus10025566 locus=Lus10025566.g ID=Lus10025566.BGIv1.0 annot-version=v1.0 ATGGATTCAGATGACGACATGATGGACGCCAAAGACATGGAGTCGGTGGACGATGATTTCTATAGCGGGGAAATGGAGGATGATTACTACAGCGAAGGCT GTGCTGATGATGATGATGGCGGCGGCGGTGCTGATGCGGAGGAGGAGGATGGTCCCGATTATGATTTCATGGCTGAAGCTGCCGATGATCCCGATGATCC CGTCTACTGGCGCCACCAGCAAAGTTATTCGGTCTTGAAGGAGGATGACATAAAGCAACGTCAAGAGGATTCTATCACTAGAGTTTCCACGGTCCTTTCC ATATCACGAGTTGACGCAACCATTCTTCTTTGCCACTACAACTGGAGTGTCAGTAAGGTCAATGATGAGTGGTTTGCTGATGAGGAGGAAGTCCGAAGAA CGGTTGGGTTGTTGGACATGCCAGCATTCGAGTTATCTGATGTTAGAGAACTTACTTGTGGCATATGTTTTGATGTCTTCACAAGTAATAAAATTAGGTC AGCGGCTTGTGGTCATCCATACTGCACTTTGTGCTGGTCAGGTTATATTAATGCTAGTGTCAATGACGGTCCTGGATGTTTGACACTGAGGTGCCCTGAT CCCTCTTGTCGAGCTTCTGTTGGTAAAGACATGATCAATATGCTGGCATCGAATGAAGATAAGGAGAAATATGCTCGCTACCTTCTTAGATCCTTTATTG AAGGCAACAGGAAGACCAAATGGTGCCCTGCTCCAGGATGTGAGTGCGCTGTTGATTTTGCTGCCGGTACTGGCAACTTTGATGTCTCCTGCTTTTGCTC TTATAGCTTTTGCTGGAATTGCACAGAGGAAGCTCACCGTCCAGTGGATTGTGGCACTGTTTCAAAGTGGATTCTGAAGAATAGTGCCGAATCGGAAAAT ATGAATTGGATACTAGCAAATTCTAAGCCCTGTCCTAAGTGCAAGCGACCAATTGAAAAAAATCAAGGATGCATGCACATGATGTGTACGCCTCCTTGCA AATTTGAGTTTTGCTGGTTATGCCTTGGAGCCTGGTCAGATCACGGGGAGAGGACAGGTGGTTTTTATGCATGTAACCGTTATGAGGCAGCTAAGCAGGA GGGAGCATATGACGAGGCTGAGAGGAGGAGGGAAATGGCTAAAAATTCCTTGGAGCGATATACACATTATTATGAAAGATGGGCAAGCAATCAATCGTCG AGACAAAAAGCTCTTGCAGATTTGCAGGAAATGCAAAATGTGCATCTTGCAATGCTTAGCGACATACACTGCACACCCGAGTCCCAGCTCAAGTTCATAC CTGATGCTTGGCTTCAGATAGTTGAATGCAGACGAGTGTTGAAATGGACCTATGCATACGGGTATTACCTACCTGAACATGAGCAAGCAAAGAGACAGTT CTTCGAGTATCTGCAAGGGGAAGCAGAGTCTGGCTTGGAAAGACTTCATCAGTGTGCAGAGAAAGAGTTGCGACTGTTCCTCACTGCCGAGTCTGATCGG CCATCAAAGGAATTCGAAGAGTTCCGCACAAAGCTAGCTGGACTCACTAGTGTGACGAAGAATTACTTCGAGAACCTGGTAAAAGCATTGGAGAATGGCC TAACGGACGTGGATTCAAATGGTTCTAGTAGCAAAGCATCAGGCTCAAAGGATGTGGTTGGTATCAAGGGAAAAGGTGTGTGGGGGTCAGGAAGCATAAA AACCGGAAGAAAAGCCGATGATTGA
AA sequence Show only first row Show all	>Lus10025566 pacid=23145138 polypeptide=Lus10025566 locus=Lus10025566.g ID=Lus10025566.BGIv1.0 annot-version=v1.0 MDSDDDMMDAKDMESVDDDFYSGEMEDDYYSEGCADDDDGGGGADAEEEDGPDYDFMAEAADDPDDPVYWRHQQSYSVLKEDDIKQRQEDSITRVSTVLS ISRVDATILLCHYNWSVSKVNDEWFADEEEVRRTVGLLDMPAFELSDVRELTCGICFDVFTSNKIRSAACGHPYCTLCWSGYINASVNDGPGCLTLRCPD PSCRASVGKDMINMLASNEDKEKYARYLLRSFIEGNRKTKWCPAPGCECAVDFAAGTGNFDVSCFCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESEN MNWILANSKPCPKCKRPIEKNQGCMHMMCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQSS RQKALADLQEMQNVHLAMLSDIHCTPESQLKFIPDAWLQIVECRRVLKWTYAYGYYLPEHEQAKRQFFEYLQGEAESGLERLHQCAEKELRLFLTAESDR PSKEFEEFRTKLAGLTSVTKNYFENLVKALENGLTDVDSNGSSSKASGSKDVVGIKGKGVWGSGSIKTGRKADD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	1.0	0.8980
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	3.5	0.8495
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	4.0	0.8711
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	5.2	0.8567
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	7.7	0.8431
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	12.7	0.8298
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10035801 [exp]	18.5	0.7585
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	20.3	0.8402
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	20.5	0.8099
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	22.2	0.8129

Compare expression of checked genes

Lus10025566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.