Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03650 217 / 2e-73 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G11340 47 / 9e-07 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013120 [exp] 45 / 6e-06 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10008088 [exp] 45 / 6e-06 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134000 [exp] 237 / 4e-81 AT1G03650 240 / 2e-82 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134102 [exp] 235 / 2e-80 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 50 / 5e-08 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G248900 [exp] 48 / 3e-07 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G222900 [exp] 40 / 0.0004 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10025567 pacid=23145018 polypeptide=Lus10025567 locus=Lus10025567.g ID=Lus10025567.BGIv1.0 annot-version=v1.0 ATGGCGATGGCGACTAGTATCGGAGTCACGGTGGTGGAAGAGGTCCAAAGAAACTCAATCAATTGGGTGAAGGTCGTGGAAGAAGTGGTGAAGATGGAGA GGAAGATATTCCCCAAGCACGAATCACTCGCCAAATCCTTCGACGAAGAGCTGAAGAAGAAGAATTCAGGGTTGCTCTACTTACGAACCACCACCGGCGG GGAAGAAGTCATCGGCTACGTCATGTATTCCTGGCCTTCTTCCCTTTCCGCTTCCATCACCAAGCTCGCAGTGAAGGAGAGTTGGAGGAAGCAAGGACAC GGGGAGGCGCTTCTGAGAGCGGCGATTGTGAAATGCAGGACTAGAAATGTGCAGAGGGTGTCGCTTCACGTCGATCCTTTGAGGGAAGCTGCCGTGGGAT TGTACAAGAAGCTTGGGTTTGAAGTTGATTGCTTGGTTGAAGGTTATTATTCCTCCGATCGAAATGCCTACAGAATGTACCTCGATTTCGATTCTGACTA A
AA sequence Show only first row Show all	>Lus10025567 pacid=23145018 polypeptide=Lus10025567 locus=Lus10025567.g ID=Lus10025567.BGIv1.0 annot-version=v1.0 MAMATSIGVTVVEEVQRNSINWVKVVEEVVKMERKIFPKHESLAKSFDEELKKKNSGLLYLRTTTGGEEVIGYVMYSWPSSLSASITKLAVKESWRKQGH GEALLRAAIVKCRTRNVQRVSLHVDPLREAAVGLYKKLGFEVDCLVEGYYSSDRNAYRMYLDFDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03650			Acyl-CoA N-acyltransferases (N...		Lus10025567 [exp]	0	1
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	3.2	0.8258
AT5G58920			unknown protein		Lus10040699 [exp]	3.6	0.8271
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	9.6	0.8122
AT1G69980			unknown protein		Lus10036679 [exp]	13.1	0.7909
AT2G44850			unknown protein		Lus10028204 [exp]	15.2	0.7904
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	22.5	0.7604
AT4G39235			unknown protein		Lus10004160 [exp]	24.9	0.7644
AT5G11500			unknown protein		Lus10038625 [exp]	25.6	0.7734
AT1G18680			HNH endonuclease domain-contai...		Lus10015728 [exp]	27.6	0.7446
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	28.6	0.7656

Compare expression of checked genes

Lus10025567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.