Plant FIBer expression Database

Lus10025568 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40520 285 / 2e-87 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027029
[exp]
1055 / 0 AT5G40520 286 / 1e-87 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G018300
[exp]
358 / 1e-115 AT5G40520 374 / 1e-120 unknown protein
PFAM info
Representative CDS sequence
>Lus10025568 pacid=23145064 polypeptide=Lus10025568 locus=Lus10025568.g ID=Lus10025568.BGIv1.0 annot-version=v1.0
ATGAAGCGAAGTAGATCATTTGATATTGCTCCTGGCGTTTTGAACAAGTGCTCTGAAAAGACACTGTCATTTGAGTATGATCAATCTCTTCAGACGGTGA
AGGATGGGGAAATAGGTTGTTTCTGGACTGACCACAAATCGTTACTTTCGGAACTTAAGCAACAGGACCAGATGCTTCGACTCAAAAGAAGGTTTGTAAT
GGGAGTGGAGATGTCCAAATCTGAGCAGAAGAGACTTTTGAAATATAAGTGTGTGCCTGAATCCTTACTTAGGGAAGATGATATATTTTATGATGATGTT
AAAGCATATGTTGAAGAAGCGTTTGGAGGTCACCATGTTCAGAACGAGGTTGAAACTCAGCTTCTCAATATGAACAATATTAAAGAGATCGTCATGTGTT
GTCTTGATTCTTTGACCAGTAAGGGCCTTTACCTTCTTGCTATGTTCCTAACAAAAGTATCACCGGAGGCTGGAAAGACACGCAAGAAAATGAGAGAGGA
AATCAAGAAATCTTTTCCAGGATTTCTTAGGGATCAAAGAAGCAACCCTGAAAATTTTGAAACTTTAAGAAAGTTGGCTCAGCTTCTCAGTGATCGGGAG
AATATTCGACTAGACTGTTGTACGGATAACTTTCAACGCCAAGTTGCTGCAATTCAAATGTTGGGCAGACTAAAAGAGTTGCCAACTGAAGCATTGTTCG
CTATGCGCAGGAAACTAAGAGGTATACCAGCAGAATTACCTCATTTACCGAAAAGGAGACATGGATGGAGTCGAGATACCTTGATTCATAAGATAAAGAA
GGCCAGCCAGAAAATGCTGTCAGAATTTGGCACAGGTAGAAGGAACAGCCTTCATGAACCTTTAGCCAAGTCTCTTGCCGTTGCAGGTTTATCACTAAAG
TTGAAAAGATGTCCTGATTACTACATGCCGGAGTTTGTGAATTTCCCCCCAGAAGTAGAAACGTTACAGAATGAAATTATTAAGGCTATTTGGCTACTCG
AATCGAAGGTCACAATGTCAGAGCTTCAAAGCATGCAGAATTTGTTTGATCCAAGTGGCAATATCTCAAAGCGGTCTTTGCGTACATTCATGAAGAAACT
ACTTGCTGAGTATTTATTTGAGTGTGGTGAATTAGACTCCATTCCTCAGGAATTGCTGGATGCTCTTGCTATTATCAATAAGAGTTCTCGGGTTTCAACA
GACTCGAACCACATCATTGATGAAGAAATCGAATGCATCTTATGTGTAAGTTCCGGAATAAAGCAGCTGGTTTGGGATTTAACTCCTGATCACGGGTTTG
ACGGGGATTTTGCTGATGCATATTTGGAAGGACAATCTGATTCTGAAGATGATGAGAGTTGTGATATTTATCTCCGGAAACCAGGCTCTCCAAGTTCCAT
GCTTATATCTATGGACTCGGATAACGATGGAGAGAGTGTCGCAGAGCATAACCCTCTCGAATGCGAGTCAGATATCACCGATGGTTGTGGTAGTCCTTCT
CAAACGCAGGAAGTTGAAAGTCATCCTGGATCTAGTGGGGGAGATTCTGGTCCTGACGATCAGATTACCCGCAAAAACTTGTACCTCGGCATCCAAGAAG
CTGCTGATTCCGCGAGCATGGTTTCTTACAACCTCATTGGCCATCTGTTGGAGGGGTTGGCTCGGGAAGAAAGGCTAGATCTTGATTCGAATCACGGTTC
TATCATTGTTCAAGTTGTTGAAGATTTATTACCTTCTTTCCCCAGGAGGTAA
AA sequence
>Lus10025568 pacid=23145064 polypeptide=Lus10025568 locus=Lus10025568.g ID=Lus10025568.BGIv1.0 annot-version=v1.0
MKRSRSFDIAPGVLNKCSEKTLSFEYDQSLQTVKDGEIGCFWTDHKSLLSELKQQDQMLRLKRRFVMGVEMSKSEQKRLLKYKCVPESLLREDDIFYDDV
KAYVEEAFGGHHVQNEVETQLLNMNNIKEIVMCCLDSLTSKGLYLLAMFLTKVSPEAGKTRKKMREEIKKSFPGFLRDQRSNPENFETLRKLAQLLSDRE
NIRLDCCTDNFQRQVAAIQMLGRLKELPTEALFAMRRKLRGIPAELPHLPKRRHGWSRDTLIHKIKKASQKMLSEFGTGRRNSLHEPLAKSLAVAGLSLK
LKRCPDYYMPEFVNFPPEVETLQNEIIKAIWLLESKVTMSELQSMQNLFDPSGNISKRSLRTFMKKLLAEYLFECGELDSIPQELLDALAIINKSSRVST
DSNHIIDEEIECILCVSSGIKQLVWDLTPDHGFDGDFADAYLEGQSDSEDDESCDIYLRKPGSPSSMLISMDSDNDGESVAEHNPLECESDITDGCGSPS
QTQEVESHPGSSGGDSGPDDQITRKNLYLGIQEAADSASMVSYNLIGHLLEGLAREERLDLDSNHGSIIVQVVEDLLPSFPRR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40520 unknown protein Lus10025568
[exp]
0 1
AT3G26540 Tetratricopeptide repeat (TPR)... Lus10032922
[exp]
10.9 0.8164
AT5G17270 Protein prenylyltransferase su... Lus10035305
[exp]
15.7 0.8093
AT5G46100 Pentatricopeptide repeat (PPR)... Lus10013972
[exp]
22.6 0.8016
AT5G23300 PYRD pyrimidine d (.1) Lus10041623
[exp]
33.5 0.7571
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Lus10012118
[exp]
36.4 0.7630
AT4G28010 Tetratricopeptide repeat (TPR)... Lus10033639
[exp]
53.9 0.7442
AT2G02150 EMB2794 EMBRYO DEFECTIVE 2794, Tetratr... Lus10034421
[exp]
66.2 0.7797
AT4G18750 DOT4 DEFECTIVELY ORGANIZED TRIBUTAR... Lus10023710
[exp]
77.8 0.7754
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Lus10009882
[exp]
80.9 0.7453
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10000051
[exp]
82.0 0.7673

Lus10025568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.