Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 147 / 2e-38 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 146 / 5e-38 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 114 / 2e-28 TRAF-like family protein (.1) AT3G27040 100 / 2e-23 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT2G05420 99 / 3e-23 TRAF-like family protein (.1) AT3G58210 97 / 3e-22 TRAF-like family protein (.1) AT3G58340 97 / 3e-22 TRAF-like family protein (.1) AT3G58270 96 / 6e-22 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58360 95 / 7e-22 TRAF-like family protein (.1) AT3G58260 92 / 1e-20 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027030 [exp] 437 / 2e-153 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 341 / 2e-114 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 347 / 2e-109 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10007254 [exp] 263 / 2e-80 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013548 [exp] 241 / 5e-76 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 237 / 2e-75 ND / Lus10008233 [exp] 195 / 1e-57 ND / Lus10008326 [exp] 167 / 5e-49 ND / Lus10034130 [exp] 154 / 2e-40 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245100 [exp] 152 / 6e-40 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 152 / 8e-40 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 152 / 8e-40 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 151 / 1e-39 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G075000 [exp] 97 / 2e-21 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 97 / 2e-21 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.003G103200 [exp] 89 / 2e-19 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.001G130700 [exp] 87 / 6e-19 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.017G049200 [exp] 74 / 2e-14 AT3G17380 240 / 1e-77 TRAF-like family protein (.1) Potri.018G025600 [exp] 74 / 1e-13 AT2G25320 2378 / 0.0 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10025569 pacid=23144948 polypeptide=Lus10025569 locus=Lus10025569.g ID=Lus10025569.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAAATAGCCCGGCCATGAAGAAGGATACCAAGACGTTCACATGGAGGATTGATGATTTCTCCAAGCTGAAAACCCTAAAGCTTTATTGTG ACACTTTCGTCGCAGGGAGCTATAAATGGAGGCTTCTTGTTTTTCCAAAGGGGAATAATGATGTTAATCATCTGTCTGTATATTTGGATTTTGCGGATAA GGATTCAATGCCCTCTGGATGGAGTGTCCCAGCTGACTTCAGCATTACTCTTGTTGGCCAACTCACTGGCTCTTCTTCTCTGCAAAAAAGTACCACACAC AAATTCGAGAAAGACAGGTCTGATTGGGGATTTAAAAGTTTTGTGCCAATAGGCGACCTTTCTCCGAAAGGATTCCTTGTGAACGATACCCTCATCATTA AAGCTAAAGTTTCTACTGAAGAGAAACCGTCATTAGATGTTGCTTCTACTGATGAACTTAAGGTGATCGAGACTGATCAAGCTAGAGAGGCTATCAAAGT TGATGTTCTTGCTAAGTCAAATAGAACAACTAGCAGCAGTTACCTCTCTCCATCAAGTGTGCAAGTAACCTCTCGAAACCTGATGGCAGAACTTTCGACA GCTACTGCTAGTAGCAACTCTTCTTCGTTGAATGGAATCTCTTGCTCAATTCCAGGCGATGTTTCGGGTGTGTTGCAACAACAAAGAGAGAAATTTCTTG GCTTCTTCCACATGTCACTCGAGGCCCTCAGCCAATCCAAATCACTTGATGAAGTGGAGAACATTGCCCTCGAAATATTTAAGCAGGCAACTGATCCGCT AGAGAAGACTGTCCTGAACGACCTGGTCTCGCGCCTGGTTGAGTTTAAAGAGATTGTTCCTAGCTCTCTGTCAACTATTGAAACAAGCCATGATGTTGAA TCATCTGTAGCCCAGATGATCAAAGAACTGGAGATCAGGCTGGTTCACAGAAACGGGCAGTTGAGCTCTTTGGAAGCAGAGGTTGCCAGACTGGAGGAAG AAGGCATGAAGCTGGAGGGCGAAATTCAACAACTAACTGCTCGCAATGCCAAAATTCTTGATCATAAGAATACCACTGCTGTTGAACTTGACAAGGCCAA TGAAGAAGCATCCAAGGAACTGGAAGAATGGAAGAATCAACAGAGTCAGAAGAAGGAAGCGGTGGAGAAGCGGATGGGAGCCAAGGATAAACTTGCTCAG GCCAATGCTAGTTGGAAGCTCTTCAGGGAGAAGTTAGGATGGAAACTTAGCTTTTAA
AA sequence Show only first row Show all	>Lus10025569 pacid=23144948 polypeptide=Lus10025569 locus=Lus10025569.g ID=Lus10025569.BGIv1.0 annot-version=v1.0 MAEENSPAMKKDTKTFTWRIDDFSKLKTLKLYCDTFVAGSYKWRLLVFPKGNNDVNHLSVYLDFADKDSMPSGWSVPADFSITLVGQLTGSSSLQKSTTH KFEKDRSDWGFKSFVPIGDLSPKGFLVNDTLIIKAKVSTEEKPSLDVASTDELKVIETDQAREAIKVDVLAKSNRTTSSSYLSPSSVQVTSRNLMAELST ATASSNSSSLNGISCSIPGDVSGVLQQQREKFLGFFHMSLEALSQSKSLDEVENIALEIFKQATDPLEKTVLNDLVSRLVEFKEIVPSSLSTIETSHDVE SSVAQMIKELEIRLVHRNGQLSSLEAEVARLEEEGMKLEGEIQQLTARNAKILDHKNTTAVELDKANEEASKELEEWKNQQSQKKEAVEKRMGAKDKLAQ ANASWKLFREKLGWKLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10025569 [exp]	0	1
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	8.8	0.7679
AT4G26055			unknown protein		Lus10011865 [exp]	11.4	0.6810
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	16.6	0.7660
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	18.8	0.7531
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	19.1	0.7579
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	21.9	0.7576
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10041227 [exp]	28.4	0.6997
AT5G46030			unknown protein		Lus10025438 [exp]	33.8	0.7378
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	34.7	0.7094
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	38.2	0.7408

Compare expression of checked genes

Lus10025569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.