Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31500 740 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12480 661 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 660 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT5G19450 656 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT2G41860 635 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT3G51850 625 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 613 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT1G74740 611 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT5G12180 515 / 5e-177 CPK17 calcium-dependent protein kinase 17 (.1) AT3G20410 509 / 1e-174 CPK9 calmodulin-domain protein kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027032 [exp] 1068 / 0 AT2G31500 765 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10027361 [exp] 640 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027808 [exp] 639 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10009947 [exp] 633 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 632 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 630 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10014907 [exp] 625 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 618 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 616 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127000 [exp] 799 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.016G054600 [exp] 652 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 650 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 649 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.016G117200 [exp] 636 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G052900 [exp] 635 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.012G071700 [exp] 626 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 625 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.006G101300 [exp] 621 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.009G069200 [exp] 503 / 4e-172 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10025570 pacid=23144963 polypeptide=Lus10025570 locus=Lus10025570.g ID=Lus10025570.BGIv1.0 annot-version=v1.0 ATGGGAGGCTGCATTTCTTCCGCGGCCAAAGCAGGCAGAGTACTGTCGTCGAGGTTCAGCACCCGACGACCTTACTCGGATTTCAACAAGGCGCCGAGGA AGCTAGGCACATTTCGGGCCGCGGCATCGGTGGTGAAGGATCCTTCGGGGGACAACATATACGAGAAGTACGCGCTGGAGAAGGAATTGGGGAGGGGGGA GTTCGGGATAACGTACGAGTGTTTCGAGAAGATGACCGGGGAGAAGTTTGCGTGCAAGACGATATCAAAGGCGAAGCTAAGGACGGAGGTCGATGTGGAG GACGTGAGGAGGGAGGTAGAGATCATGCGGCACTTGCCGGAGCATCCGAACATCGTCAAGTTCAAGGAAGCGTATGAGGATAAAGACATGATTTATTTGG TGATGGAGCTTTGTGAAGGTGGTGAGCTCTTTGATCGTATCGTTGCTAAAGGCCATTACACCGAGCGTGCTGCTGCCATGGTTACCCGGACCATTTTGGA TTTTGTTAAGGTATGCAATGAACATGGAGTGATCCATAGGGACTTAAAGCCCGAAAATTTCTTATTTGCAGATGCATCTGAACATTCCCAACTCAAGGCT ATTGATTTCGGTCTTTCCATTTTCTTCGAACCGGATCAACGGTTCAACGAGATTGTTGGAAGTCCGTATTACATGGCTCCGGAGGTACTTAGACGAAATT ACGGCCCTGAAATTGATGTGTGGAGCACTGGTGTCATCCTCTACATCTTGCTTTGTGGAGTTCCTCCATTTTGGGCCGAAACTGAGGAAGGCATTGCACA AGCAATTGTAAGAGGGCATCTGGATTTTTCAAGGGATCCATGGCCTAAGGTGTCTAAGGAAGCCAAAAGCTTGGTTAAGAGCATGCTTGATCAAAATCCA TACTCTAGGTTAACCATCCAAGAAGTTCTCGAACATCCGTGGATACAAAATGCGAGCGAGGCACCGAATGTGTCGCTGGGAGAGAATGTGAGAGCAAGGA TCAGGCAGTTCTCTCTAATGAACAAATTCAAAAAGAGAGTTCTCCGAGTTGTAGCTGACAACTTGCCGGACGAGCAAGTAAACCACATAAGACAGTTGTT CCAGACAATGGACACAGACAAAAACGGAGACGTATCGTTCGAAGAACTTAAAGACGGTCTGCTGAACACCGGTCATGTTCTTCCTGATCTTGAAATTAAG ATGCTAATGGACGCGGCGGATTTTGATGGGAACGGGACGTTGAGCTGGGACGAGTTCATAGTTATGTCAATTCATTTGAGAAAGATTGCAAACGACGACA ATCTAGCTCGAGCATTCAGCTTCTTCGACAAGAACAAGAGCGGTTATATCGAGATCGACGAGTTGAGAGACGCCATGATTGAAGATCATTTAGGTCCCAA CAATATCGAGCAAGTCATTAAAGATATTATGGGAGACGTTGATCTCGATAAGGATGGACGAATAAGTTACGAGGAATTCAAATCGATGATGAAGAGCGGG ATGGATTGGAAGATGGCATCTCGTCAATATTCAAAGGCCATGCTAAATGCCCTAAGCATCAAGCTACTCAAGGACAAATCATTGGCTCAGATTAAGACGT TATCTCTCTCAGGGAGAGTCTGTAACCGCCGATACATGGCCTCCCCAACGAACCCTAACCGTCCCAACACAAACCCTAAACCGACCTCAACCATCGGCAG CACCAGCATCGCCATGTTTTTCTCCAGCAATCACTCCTCCCGCCCCGCCACCGGCAATCTCAACGTCAACGAGTCTCTCCCCTCTGGCAGCAACTCCCCG CAGAGTCAAGCCGCAATCACCGTGGATCAGGCAACTCAAGGCCAACTCGAGACCGGCCGAATCCTCGCAGCTGCAACGACCGCATCGCCTCGATGTGACC TCACAGCGTCGGATCCAATGGAGACGGAAGCCGAAGGACGATTCTCGAAGTCCTTGAAGAAGACCAACCAAGAGGCGACAAGACCATTAGTTACAGCCGG TCCTTGGCAGGGGACCGGTCAGTCACACCGAGGCTTCGTCAACACAGCTAAGGCCCTAGCCCCCGCCGGTGTACTTTAG
AA sequence Show only first row Show all	>Lus10025570 pacid=23144963 polypeptide=Lus10025570 locus=Lus10025570.g ID=Lus10025570.BGIv1.0 annot-version=v1.0 MGGCISSAAKAGRVLSSRFSTRRPYSDFNKAPRKLGTFRAAASVVKDPSGDNIYEKYALEKELGRGEFGITYECFEKMTGEKFACKTISKAKLRTEVDVE DVRREVEIMRHLPEHPNIVKFKEAYEDKDMIYLVMELCEGGELFDRIVAKGHYTERAAAMVTRTILDFVKVCNEHGVIHRDLKPENFLFADASEHSQLKA IDFGLSIFFEPDQRFNEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAETEEGIAQAIVRGHLDFSRDPWPKVSKEAKSLVKSMLDQNP YSRLTIQEVLEHPWIQNASEAPNVSLGENVRARIRQFSLMNKFKKRVLRVVADNLPDEQVNHIRQLFQTMDTDKNGDVSFEELKDGLLNTGHVLPDLEIK MLMDAADFDGNGTLSWDEFIVMSIHLRKIANDDNLARAFSFFDKNKSGYIEIDELRDAMIEDHLGPNNIEQVIKDIMGDVDLDKDGRISYEEFKSMMKSG MDWKMASRQYSKAMLNALSIKLLKDKSLAQIKTLSLSGRVCNRRYMASPTNPNRPNTNPKPTSTIGSTSIAMFFSSNHSSRPATGNLNVNESLPSGSNSP QSQAAITVDQATQGQLETGRILAAATTASPRCDLTASDPMETEAEGRFSKSLKKTNQEATRPLVTAGPWQGTGQSHRGFVNTAKALAPAGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	0	1
AT4G02210			unknown protein		Lus10008312 [exp]	2.0	0.8321
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	2.6	0.7389
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	7.7	0.7163
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10035275 [exp]	9.7	0.7748
AT3G57990			unknown protein		Lus10000401 [exp]	10.8	0.7107
					Lus10031558 [exp]	13.4	0.7265
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	15.5	0.7721
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	21.2	0.7467
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	23.1	0.7422
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	23.7	0.6518

Compare expression of checked genes

Lus10025570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.