Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024696 [exp] 97 / 2e-24 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 94 / 3e-23 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10020748 [exp] 89 / 2e-21 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10022888 [exp] 84 / 8e-20 ND 38 / 0.010 Lus10036867 [exp] 79 / 5e-19 AT1G66310 41 / 2e-04 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 77 / 3e-17 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024694 [exp] 73 / 2e-16 ND / Lus10042477 [exp] 71 / 7e-15 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029589 [exp] 71 / 7e-15 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 57 / 4e-10 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025571 pacid=23145103 polypeptide=Lus10025571 locus=Lus10025571.g ID=Lus10025571.BGIv1.0 annot-version=v1.0 ATGTCTGGAAAATTTATCCCTGACTGGTTTGCGATATCCGGGCTCCAATTGCTTACTCTGGATCTTGAAGATAACTTTTTTGACAAGTTTCAGATACACG CACCAAAACTCAAGTCCTTTAGTTTGGTGGAACACATTTCAGTCCTGGAGTGTACACAGTCACGGCTAATCCTTCCTTCCCTCGAGCATGCTTATATTAG AGCTTGTGATTTGCGGTGTTACGACGAGAATGGCTTTAAAAACGGACAACAGTACCTGATCTCCATCCTCCACGGGATCAGAAATGCTACATCTCTTAAG TTGGGTTCCTTCACTATGGAGGTGTTGAGTCATGATATGGAATTGCTAGCAGAACAACCATGTCCCTTTACAAGGTTGCAGAGTTTAATCTTCGAGATTG GCAGCTTCATTCCCGACATAGTTCTCAACTACTTGAAAAGTTCTTCTAGTATGGAACCAACAACGTAA
AA sequence Show only first row Show all	>Lus10025571 pacid=23145103 polypeptide=Lus10025571 locus=Lus10025571.g ID=Lus10025571.BGIv1.0 annot-version=v1.0 MSGKFIPDWFAISGLQLLTLDLEDNFFDKFQIHAPKLKSFSLVEHISVLECTQSRLILPSLEHAYIRACDLRCYDENGFKNGQQYLISILHGIRNATSLK LGSFTMEVLSHDMELLAEQPCPFTRLQSLIFEIGSFIPDIVLNYLKSSSSMEPTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025571 [exp]	0	1
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	3.2	0.8307
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	8.7	0.8517
AT2G28180		CHX08, ATCHX8	CATION/H+ EXCHANGER 8, Cation...		Lus10021415 [exp]	18.7	0.8302
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	23.8	0.8222
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	27.2	0.8133
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	31.0	0.8119
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	34.3	0.8088
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	36.2	0.8106
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	36.3	0.8111
AT2G40390			unknown protein		Lus10009844 [exp]	38.8	0.8067

Compare expression of checked genes

Lus10025571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.