Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64820 48 / 5e-08 unknown protein AT1G16850 39 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027033 [exp] 160 / 9e-53 AT5G64820 69 / 6e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085000 [exp] 74 / 7e-18 AT5G64820 65 / 5e-14 unknown protein Potri.010G252700 [exp] 39 / 0.0001 AT1G16850 54 / 2e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025572 pacid=23144961 polypeptide=Lus10025572 locus=Lus10025572.g ID=Lus10025572.BGIv1.0 annot-version=v1.0 ATGGCGACGGACACCGTTTCAGTGTTGAAGAATTCGTACAGCAGCTCGTGGGACAAAGTTAGAACCATCATTCGTGACATGCAGCTGCAGTTTTCTCCCC CTAATCTTGATTTCAAAAGTGGCGATGCAAAGGGTGCGAAAGACAAGGTGATCGGAACAGCAGAGAAGAGTGTAGAAGTAAGCAAGCCTACCGTCGAAGA AACTGCTCAAACCGCCGCCGAGACAGTTGGGAGCACCGTCAAAATGACCGCCGACAAGGTCAAGGGTACCGGAGACCAAAAACCCGGCCACGAAGAGCTT TAA
AA sequence Show only first row Show all	>Lus10025572 pacid=23144961 polypeptide=Lus10025572 locus=Lus10025572.g ID=Lus10025572.BGIv1.0 annot-version=v1.0 MATDTVSVLKNSYSSSWDKVRTIIRDMQLQFSPPNLDFKSGDAKGAKDKVIGTAEKSVEVSKPTVEETAQTAAETVGSTVKMTADKVKGTGDQKPGHEEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64820			unknown protein		Lus10025572 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	2.0	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.5	1.0000
					Lus10002009 [exp]	4.2	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	4.5	1.0000
					Lus10002449 [exp]	5.3	1.0000
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10028107 [exp]	5.8	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	6.0	1.0000
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10028665 [exp]	6.3	1.0000
					Lus10003763 [exp]	6.5	1.0000
AT1G45191		BGLU1	beta glucosidase 1, Glycosyl h...		Lus10030372 [exp]	6.5	1.0000

Compare expression of checked genes

Lus10025572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.