Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20930 284 / 2e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G32580 83 / 1e-17 plastid developmental protein DAG, putative (.1) AT2G33430 79 / 2e-16 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 79 / 3e-16 plastid developmental protein DAG, putative (.1) AT1G73530 61 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11430 59 / 2e-09 plastid developmental protein DAG, putative (.1) AT3G23830 57 / 2e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G72530 57 / 4e-09 plastid developmental protein DAG, putative (.1.2) AT4G13850 55 / 9e-09 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT2G37510 53 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027035 [exp] 575 / 0 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027034 [exp] 405 / 9e-137 ND 39 / 0.005 Lus10011789 [exp] 85 / 4e-18 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 85 / 5e-18 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10026364 [exp] 68 / 6e-13 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016639 [exp] 58 / 9e-10 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10042293 [exp] 58 / 1e-09 AT1G73530 100 / 7e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018398 [exp] 58 / 2e-09 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10022551 [exp] 57 / 2e-09 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237200 [exp] 314 / 9e-101 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 308 / 2e-98 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 125 / 2e-33 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G169900 [exp] 80 / 1e-16 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 80 / 2e-16 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.006G208500 [exp] 64 / 5e-12 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 64 / 1e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G236300 [exp] 62 / 1e-11 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 61 / 6e-11 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.010G007200 [exp] 61 / 4e-10 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025573 pacid=23144969 polypeptide=Lus10025573 locus=Lus10025573.g ID=Lus10025573.BGIv1.0 annot-version=v1.0 ATGACGATGAGAGCTCTCTGTCATCCGTTTCCCACTGCCGGCGCCTCACCCGTATCAGAAATGCCGGTGGTCGCAATTACACCCTCCTTCACCGCCGCCA AGCTGGACAATTGCCACCGCCGTCGACTCCATAACCTCTCTTCTTCATCATCCACTCTCCCCACTCCAATTGCTTGTGCATCATCAACAACACCTGCTCC TCTCACTTCCACCGCCACCACATCCACCAACCGCCGCCATTGGCTAGTCCTCATGGATAATCCTCCCCAGGAGCTCGCTTCCAAGCCTGAAATCGTCAAT TACTTCGTCAAGACCCTCCAGATTGTTTTACCAAGTGAGAAGGATGCTCAAATGTCTATATACAATATTTCTTGTGGTGGTGGTGGTGATGATTCTAAAC ACTTTGGATTCTGCTGTGACATTGATGAACATGAATCCTCTGAGCTTGCTCGTTTGCCAGGGGTTTTATCCGTAATGCCTGACCCGGATTATGATTCAAC CAAAACCGGTTTTGATTCAAGTAGCATATGGTGGTTGTTTCCTCCTGGGACGACCAAGCACTGGTTAGTTAGGATGAGTAACCCTGGAATTGGCGTGGAT ACTACAAATGCACAAATGGTTGATCATTGCACAAGTGTATTAACCAAAGTTCTAAATAATGAGAGGGATGCACAGATGTCTATGTATCATGTTTCTTGGC AGTCCGATCTCGACTTCTGTTGTGAACTCGATGAAGATTGTGCGCGCGAATTGGCTGGGGTTCCTGGTGTTTTGTCTGTTGAACTGGACGAGGATTTTCG ATCGAAGACTGGAGATTGTAGAGTTGATAATGCTGATGCCAATGCAGAGAGACAAAATTCCTCAGAAGCTGTTCATCCACGAACGAAGAAACTATTTGTG ACCGGGTTGTCATTTTACACATCTGAGAAGACCTTGAGGGAAGCATTTGAGGGATTTGGTGAACTTGTGGAAGTTAAGATAATAATTGACAAGATATCAA AAAGGTCGAAAGGCTATGCATTTGTAGAGTACACCACAGAGGAAGCAGCAAGCACCGCTCTTAAGGAAATGAATGGAAAGGGTGCTGGAATTTGGTTGGG AAAAAACATTAGAAAGAAGGAAGAGATTTTGAGCTCCAAAACGAGGAACAGTCTTATGAAGAGGTCATTGTTGAAGAATGGGATCAAGAGGATTGGCTCA ATCTGCAGCAGAAGCAGAAATAAGGGACATGATGCCTCTATGCCATCATCACTTCTGAAGGAAGAAGAGACCGAATCATGTTTGTTTGGCGACAAAGATG ATGATGATGATGATTCGTGTTTGTGGCTGTCTTCCTCGACATCTACTTCATCATTCTTCGACGAGCAATCCTCATTCGACGAGGAATGGATGATCTCCAT CTTGGATGTTGATGAGGAAGAAGAGGAAGTTGGTTCATGGGTGATGGAGTTTGAAAAAGACATGAGCTTTTTGGTTGATTTGGATATGGATCAGTGGGAT TACTGTTGTGTCCCATCTAGCTTCCCTAGCCCTTCTTTCAACACCACTAGTACTGCTAGTACTAGTACTACTTGTACTAATAGAGAGGCAGAGCTAGGTT CTGCTTTTCATTTACCTTCAGGCGTTCCAGTTTCGGATATGGAACATCTGAAGGTAGCATATGATGGTGATGAGTCACCTTTGCTATGGCCTTTCGAAGG GTGGAATAATCCTGAAGAAACTTGGAGTTTCTTCATTATGTCCCCTCGTAAGGAACATATTGCGAAGTCTGAGCATCAGGAGCATGCTGGAGTTGTTTCA AGGAGGAAAAAGATAAGCATACATCGAAAAGAGCTCGATCCACAGCAGAAGGGAGACATGAAGGCCACGTTCATGGGACCGTCGAGGTTGAACAAGTCGT CGTCCTCGAAAAATTCCAAGGCTTTGATGAGAGTTGTACCATTGGAGATGATGAACATGGATCATGGTGATGATAAGTCAATAGAGATGCTGGTGGGACT TGAAGAGTTTGATGGGAATGAAGGGATGGATTCATCATCACGAGAGCACATTAATGTAGTGAATGGTGACCATATTTTCTCATTGGTGGATTAG
AA sequence Show only first row Show all	>Lus10025573 pacid=23144969 polypeptide=Lus10025573 locus=Lus10025573.g ID=Lus10025573.BGIv1.0 annot-version=v1.0 MTMRALCHPFPTAGASPVSEMPVVAITPSFTAAKLDNCHRRRLHNLSSSSSTLPTPIACASSTTPAPLTSTATTSTNRRHWLVLMDNPPQELASKPEIVN YFVKTLQIVLPSEKDAQMSIYNISCGGGGDDSKHFGFCCDIDEHESSELARLPGVLSVMPDPDYDSTKTGFDSSSIWWLFPPGTTKHWLVRMSNPGIGVD TTNAQMVDHCTSVLTKVLNNERDAQMSMYHVSWQSDLDFCCELDEDCARELAGVPGVLSVELDEDFRSKTGDCRVDNADANAERQNSSEAVHPRTKKLFV TGLSFYTSEKTLREAFEGFGELVEVKIIIDKISKRSKGYAFVEYTTEEAASTALKEMNGKGAGIWLGKNIRKKEEILSSKTRNSLMKRSLLKNGIKRIGS ICSRSRNKGHDASMPSSLLKEEETESCLFGDKDDDDDDSCLWLSSSTSTSSFFDEQSSFDEEWMISILDVDEEEEEVGSWVMEFEKDMSFLVDLDMDQWD YCCVPSSFPSPSFNTTSTASTSTTCTNREAELGSAFHLPSGVPVSDMEHLKVAYDGDESPLLWPFEGWNNPEETWSFFIMSPRKEHIAKSEHQEHAGVVS RRKKISIHRKELDPQQKGDMKATFMGPSRLNKSSSSKNSKALMRVVPLEMMNMDHGDDKSIEMLVGLEEFDGNEGMDSSSREHINVVNGDHIFSLVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Lus10025573 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	22.5	0.7608
AT1G20230			Pentatricopeptide repeat (PPR)...		Lus10006815 [exp]	41.0	0.7318
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	46.2	0.7445
AT3G62010			unknown protein		Lus10009251 [exp]	51.1	0.7476
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	62.4	0.7418
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	66.1	0.7307
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	74.6	0.7141
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	79.6	0.7298
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	100.3	0.7063
					Lus10001494 [exp]	184.9	0.6577

Compare expression of checked genes

Lus10025573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.