Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31440 241 / 3e-80 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027036 [exp] 295 / 2e-101 AT2G31440 396 / 2e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127400 [exp] 260 / 1e-87 AT2G31440 353 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF06105 [flax] [poplar] Aph-1 Aph-1 protein
Representative CDS sequence Show only first row Show all	>Lus10025574 pacid=23144971 polypeptide=Lus10025574 locus=Lus10025574.g ID=Lus10025574.BGIv1.0 annot-version=v1.0 ATGACGGTGGCTGCAGGGATCGGGTACGCACTGTTAGCATTAGGGCCCTCCCTCGCTCTCTTCGTCTCCGTCATCTCCAAAAAGCCCTTCCTCATCCTCA CCGTCCTCTCCAGTACATTGCTATGGCTGATAAGCTTAATCCTGCTGTCTGGGTTATGGCGCCCATTCCTTCCTCTCAATTCCGCTAACTCCTGGCCTTT CGCTTTGCTTATTATTTCCTCAGTTCTGTTTCAAGAGGGCCTTCGGATTCTTTTCTGGAAGATTTACAAGAAATTGGAAGATATATTGGATGCTTTTGCT GACAGGCTCTCAAAACCGCGCTTGTACCCTACTGATAAGATGCTAATTGCTCTTGCTGGTGGTTTAGGTCATGGTGTGGCGCATGCTGTTTTCTTCTGTC TCAGTGTTTTGACACCAGCATTTGGTCCTGCAACATTCTTCACTGATCAGTGTTCACAGCTACCATTCTTTCTTATTTCGTCAATTATTGCTCTTGCGTT TGCTACAATTCACACTTTCTCGATGGTTATCGCCTTCAATGGGTATGCAGAGGGGAATAAAGTGGATCAAATTTTCGTCCCTTCGGTTCATCTCGTCGCA GGAATGGTGGTAAGAATGTGTTCTCAGAGTTTCTATTGCGGTATTGCCATTCCTGAAAATAGAGTTCTATTTCTTAGTGTAGCGTACCTGATATGCGTTG CATGTTCATACGAAACCTTAGTAATGGACTTAGAAACTGATAAGTGA
AA sequence Show only first row Show all	>Lus10025574 pacid=23144971 polypeptide=Lus10025574 locus=Lus10025574.g ID=Lus10025574.BGIv1.0 annot-version=v1.0 MTVAAGIGYALLALGPSLALFVSVISKKPFLILTVLSSTLLWLISLILLSGLWRPFLPLNSANSWPFALLIISSVLFQEGLRILFWKIYKKLEDILDAFA DRLSKPRLYPTDKMLIALAGGLGHGVAHAVFFCLSVLTPAFGPATFFTDQCSQLPFFLISSIIALAFATIHTFSMVIAFNGYAEGNKVDQIFVPSVHLVA GMVVRMCSQSFYCGIAIPENRVLFLSVAYLICVACSYETLVMDLETDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31440			unknown protein		Lus10025574 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	3.5	0.8955
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10011806 [exp]	5.7	0.8300
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	6.6	0.8578
AT5G21070			unknown protein		Lus10026764 [exp]	7.6	0.8652
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	11.0	0.8514
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	12.8	0.8650
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	15.4	0.8219
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	15.7	0.8045
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	15.9	0.8209
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	17.2	0.8097

Compare expression of checked genes

Lus10025574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.