Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31450 422 / 5e-147 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 403 / 1e-139 ATNTH2 endonuclease III 2 (.1.2) AT3G47830 45 / 5e-05 DNA glycosylase superfamily protein (.1) AT3G10010 44 / 0.0002 DML2 demeter-like 2 (.1) AT4G34060 42 / 0.001 DML3 demeter-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027037 [exp] 603 / 0 AT2G31450 416 / 3e-145 DNA glycosylase superfamily protein (.1.2) Lus10000431 [exp] 196 / 8e-62 AT2G31450 146 / 3e-43 DNA glycosylase superfamily protein (.1.2) Lus10001182 [exp] 55 / 8e-08 AT4G12740 464 / 2e-158 HhH-GPD base excision DNA repair family protein (.1) Lus10043074 [exp] 55 / 8e-08 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1) Lus10023864 [exp] 45 / 0.0001 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127600 [exp] 503 / 5e-179 AT2G31450 421 / 3e-147 DNA glycosylase superfamily protein (.1.2) Potri.014G198000 [exp] 58 / 5e-09 AT4G12740 523 / 0.0 HhH-GPD base excision DNA repair family protein (.1) Potri.015G071300 [exp] 44 / 0.0002 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein CL0198 [flax] [poplar] PF10576 [flax] [poplar] EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III CL0198 [flax] [poplar] HHH PF00633 [flax] [poplar] HHH Helix-hairpin-helix motif
Representative CDS sequence Show only first row Show all	>Lus10025575 pacid=23145022 polypeptide=Lus10025575 locus=Lus10025575.g ID=Lus10025575.BGIv1.0 annot-version=v1.0 ATGCTACTTGTCGCTTCTCTACCGGAGCAGAGAATGTCTCTGACTCTGCTCCGCCTACGCACTTACACTATTCAATTCCCGGCGGAAGTTTGGGGAATCA GAATGTCGCCGATCACCAGAAGGTTCTCTTCCAAACCCCTCCAATCCCAATCAGCTTCACCCACTCCTGCCTCACACAATCCCATCCCAGGTTCATCTCC CGCCCCTATCTCTGGAATTCGTGTATTTTCCAGGAAAAAGAGGGCGGTGAAGGACGACGTGGAAGTTACAGAAAATACAGTCGAGGCTGAGCCCATCGCA GAAAAACTATCTGTCTTGCCTGACATTGAAGCATTTGCATACGGAAAGCCGAACGTACCAGTCCAGTCAAAGAAGGCAAAACATGTCGTGGAGTTGCTTC CTCCGGACAAGGAAGTTGTCTCCACAATCAGGAAAACAGGCGAGCCACCTGTAAACTGGGAAAAGATCCTTGATGGAATCCGCAAGATGCGATCTTCTGA AGATGCTCCTGTAGATACTATGGGATGTGAGAAAGCTGGAAATTCTCTTCCTACTAAGGAAAGAAGATTTGCGGTCCTCGTCTCTTCACTGCTTTCAAGC CAGACCAAAGATCATGTTACTCATGGAGCAATTCAACGTCTCGGTCAGAATGGGTTGCTTCATCCTGATGCTGTTGAAAAGGCAGATGAAACAACAATCA AAGATTTGATTTATCCCGTTGGTTTCTATACAAGAAAAGCAAGCAATATGAAGAAGATTGCAAAAATTTGTCTTACAAAGTATGACGGGGATATACCGAA TTCGTTGGAGGGTTTGCTGTCACTTCCAGGAATAGGGCCTAAGATGGCTCATTTGGTTATGAACGTGGCTTGGGATGATGTACAAGGGATATGCGTAGAT ACTCATGTTCATCGTATTTGTAATCGACTCGGTTGGGTTTCACGACCCGGCACAAAACAGAAAACTTCAACCCCTGAGCAAACGAGAGAGGCTCTTCAGC TGTGGCTTCCAAAGGAAGAATGGGTTCCCATAAACCCTCTCTTGGTAGGATTCGGGCAGACGATATGCACTCCTCTCAGACCTCGGTGTGGGATGTGTTC AGTGAGTGACTTGTGTCCATCTGCATTCAAGGAGAGCTCGAGCCCGTCGTCAAAGTCTAAAAGACTGCCTAGGCTCAAGAAAACATCCTCAACATCGTAG
AA sequence Show only first row Show all	>Lus10025575 pacid=23145022 polypeptide=Lus10025575 locus=Lus10025575.g ID=Lus10025575.BGIv1.0 annot-version=v1.0 MLLVASLPEQRMSLTLLRLRTYTIQFPAEVWGIRMSPITRRFSSKPLQSQSASPTPASHNPIPGSSPAPISGIRVFSRKKRAVKDDVEVTENTVEAEPIA EKLSVLPDIEAFAYGKPNVPVQSKKAKHVVELLPPDKEVVSTIRKTGEPPVNWEKILDGIRKMRSSEDAPVDTMGCEKAGNSLPTKERRFAVLVSSLLSS QTKDHVTHGAIQRLGQNGLLHPDAVEKADETTIKDLIYPVGFYTRKASNMKKIAKICLTKYDGDIPNSLEGLLSLPGIGPKMAHLVMNVAWDDVQGICVD THVHRICNRLGWVSRPGTKQKTSTPEQTREALQLWLPKEEWVPINPLLVGFGQTICTPLRPRCGMCSVSDLCPSAFKESSSPSSKSKRLPRLKKTSSTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	0	1
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	2.4	0.8537
AT5G24000			Protein of unknown function (D...		Lus10039272 [exp]	4.8	0.8297
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	5.5	0.8620
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	5.9	0.8780
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	6.9	0.8581
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	7.9	0.8522
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	11.2	0.8368
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	16.2	0.8516
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	17.0	0.8413
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	17.5	0.8448

Compare expression of checked genes

Lus10025575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.