Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59510 358 / 2e-121 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 193 / 9e-58 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 191 / 2e-56 Leucine-rich repeat (LRR) family protein (.1) AT5G63930 121 / 1e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 120 / 3e-29 AtPEPR2 PEP1 receptor 2 (.1) AT4G03010 116 / 9e-29 RNI-like superfamily protein (.1) AT4G20140 119 / 1e-28 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G22730 118 / 2e-28 Leucine-rich repeat protein kinase family protein (.1) AT1G03440 115 / 2e-28 Leucine-rich repeat (LRR) family protein (.1) AT5G46330 116 / 6e-28 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007417 [exp] 560 / 0 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 559 / 0 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10027040 [exp] 377 / 1e-131 AT3G59510 199 / 5e-62 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 151 / 1e-41 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 129 / 1e-33 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 129 / 3e-33 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10011761 [exp] 128 / 1e-31 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 127 / 2e-31 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009476 [exp] 125 / 7e-31 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028600 [exp] 411 / 3e-142 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 407 / 5e-140 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 200 / 1e-59 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 194 / 2e-57 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 186 / 1e-54 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 185 / 2e-54 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 184 / 3e-54 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028325 [exp] 146 / 4e-42 AT3G59510 129 / 7e-36 Leucine-rich repeat (LRR) family protein (.1) Potri.012G088900 [exp] 123 / 3e-30 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G001000 [exp] 119 / 6e-30 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10025578 pacid=23145093 polypeptide=Lus10025578 locus=Lus10025578.g ID=Lus10025578.BGIv1.0 annot-version=v1.0 ATGGCCGAACCAAACCCTTACTACTACCTTCTACTTCTAAGTACCCTACTACTTATCATCCCCGACCCGGTCGAACCGATCACCGCAGTCTCGGACGTTC AAGTACTCCACGCGGTGCGAGAATCCATCGACCCCGTCACGATCGCCACTTCCTCGTTCCTCTACAGCTGGGACTTCAACGTGGACCCGTGCGATAGCCC CGGGGCATTTTTCGGTGTTATGTGTTCGTTCCCACTCGATAACACGAGCAGTCGGGTCGTGGCCATCGGTCTTGACGATGCAGGATACGATGGTTTTTTG TCTCCGGCGATTGGGAACCTGACCGAGCTTGTAACGCTCGATCTCACGGGGAACAAATTCCGCGGTCCTATCCCGGAGACTATTGTCAACCTGAGACAGC TCACCAGGCTCTTGATCTCCGGAAATCTCTTCACCGGCCAGATCCCCGAAGCGATCACCCGATTGAAGCTGCTTCAGGAGATCGACGTCTCGAAGAATCA CTTATCCGGTCAGATCCCGGCGAGAATCGCGGTTTTACGAGGTCTAACTCGGCTGGTCATGTCCGACAATGCGATCTCCGGCAGGCTGCCGGATCTAGCC GGATTGTGGCAGCTGAGTACATTGGATGTCAGTTACAACGAGCTGTATGGAAACTTACCGAGACTGCCTCGAAACCTGAAAACTCTGTTGATGACACGAA ACGTACTCTCCGGCCATATCTCGCCGTTAAAGCATCTCCGGCGGTTGTTGGTGCTGGATCTGAGCAGTAACCGGCTGTCAGGTCGAATCCTCCGAGAAGT CCTCACTTTATCGACTTTAGTACGGCTGAACGTCTCTCACAACCACTTCACGGCGATCGATCAAATCGATTTCCCCGGGAGCTCGATTCGTCTTCAGATG ATCGATGCGAATGATAATCAGTTGCACGGGCACTTGCCGCTTACCTTGGCCGGATTAGAGAATCTTACGTCTCTGGACCTGTCACATAACTACTTGACCG GCTCAATATCGTCGGAGTTTGGAGCTAAAGTAGGGAAAGCGTGGTTGAGCCTTTTCTTGAATGACAATTTTCTCCAGGGAAGTATACCGCCGAAGTTGGA AGACGATTCGCTGCAGATCAGAGGCAACTTTGCTAACAACTGCTTGAAATGTCCGGCCACCGTTCATCTCTGTCGAGGAGGTCAAAGACCGCACGCTGTG TGTGCAGCTCAACGATGA
AA sequence Show only first row Show all	>Lus10025578 pacid=23145093 polypeptide=Lus10025578 locus=Lus10025578.g ID=Lus10025578.BGIv1.0 annot-version=v1.0 MAEPNPYYYLLLLSTLLLIIPDPVEPITAVSDVQVLHAVRESIDPVTIATSSFLYSWDFNVDPCDSPGAFFGVMCSFPLDNTSSRVVAIGLDDAGYDGFL SPAIGNLTELVTLDLTGNKFRGPIPETIVNLRQLTRLLISGNLFTGQIPEAITRLKLLQEIDVSKNHLSGQIPARIAVLRGLTRLVMSDNAISGRLPDLA GLWQLSTLDVSYNELYGNLPRLPRNLKTLLMTRNVLSGHISPLKHLRRLLVLDLSSNRLSGRILREVLTLSTLVRLNVSHNHFTAIDQIDFPGSSIRLQM IDANDNQLHGHLPLTLAGLENLTSLDLSHNYLTGSISSEFGAKVGKAWLSLFLNDNFLQGSIPPKLEDDSLQIRGNFANNCLKCPATVHLCRGGQRPHAV CAAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10025578 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011831 [exp]	19.1	0.6188
AT1G78810			unknown protein		Lus10028833 [exp]	27.7	0.5760
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	46.6	0.5972
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	69.3	0.5695
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10036421 [exp]	77.0	0.5664
AT1G24140			Matrixin family protein (.1)		Lus10008449 [exp]	86.0	0.5485
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	93.4	0.5157
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	114.8	0.5242
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Lus10029456 [exp]	177.1	0.4961
AT3G14040			Pectin lyase-like superfamily ...		Lus10038316 [exp]	202.9	0.4604

Compare expression of checked genes

Lus10025578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.