Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06040 282 / 2e-96 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 275 / 1e-93 CO STH salt tolerance homologue (.1) AT1G78600 144 / 2e-41 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G75540 129 / 1e-35 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G10240 122 / 1e-34 CO B-box zinc finger family protein (.1) AT4G39070 121 / 1e-33 CO B-box zinc finger family protein (.1) AT2G21320 89 / 5e-22 CO B-box zinc finger family protein (.1) AT4G38960 88 / 3e-21 CO B-box type zinc finger family protein (.1.2.3) AT5G15850 85 / 6e-19 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT2G24790 83 / 2e-18 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027041 [exp] 427 / 2e-153 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10042498 [exp] 142 / 5e-41 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10038147 [exp] 142 / 7e-41 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10028791 [exp] 130 / 3e-37 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 129 / 1e-36 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10031087 [exp] 91 / 4e-22 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 91 / 4e-22 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 86 / 1e-20 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10020105 [exp] 82 / 9e-18 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028301 [exp] 342 / 2e-120 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.017G028300 [exp] 341 / 7e-120 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.007G130100 [exp] 325 / 1e-113 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.001G384000 [exp] 145 / 3e-42 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.011G105400 [exp] 144 / 6e-42 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.002G028200 [exp] 139 / 2e-39 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 138 / 2e-39 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.004G161000 [exp] 130 / 2e-37 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 124 / 7e-35 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.004G162600 [exp] 94 / 3e-23 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025579 pacid=23145085 polypeptide=Lus10025579 locus=Lus10025579.g ID=Lus10025579.BGIv1.0 annot-version=v1.0 ATGAAGATCCAGTGCGATGTCTGCGAGAAGGCTCCGGCCACGATGATATGCTGCGCCGACGAAGCAGCTCTCTGCGCCAAATGTGACGTCGAAGTTCATG CTGCTAACAAGCTCGCGAGCAAGCACCAGCGCCTCCTCCTTGATTCCCTCTCCGACAAGCTCCCTCGCTGTGACATCTGTCAGGAAAAGACAGCGTTCAT ATTCTGTGTTGAAGACAGAGCTCTATTCTGCAAGGATTGTGATGAACCGATCCATTCAGCTGGGAGTCTTTCAGCAAACCACCAGAGGTTTCTTGCCACA GGGATAAGAGTGGCATTGACCTCTAGCTGCAGCAACTACACGGAGAAGAGCTGTTTCGAGCCGCCACCGAATCAGAGCAGACCCCAACAGGTGCCCGCGA AATTGCAGCCTGCACAGCCGCAACAGCAGTCTTCGAGCTTCGGATCCCCTTGGGGTGTTGATGATTTGCTTCACTTCTCTGATTTTGGATCTTCCGCTGA CAAAAAGGAGCAAATGCAGATGGGAGAGTTTGAATGGCTAGCTGACATGGGTCTTTTCGGAGATCAATTCACCGATGAGGCCCTTGCAGCTGCTGAAGTG CCCCAACTACCTGCAGTTTCGCCAACAGTGAGTTTCAGCTCATACAAACCCACCAAATCATCTGGTATGCCCAATAAGAAGCAGAGGGTCGAGATTGCTG ACGAGGATGATGAGTACTTCATGGTGCCTGACATTGGTTAA
AA sequence Show only first row Show all	>Lus10025579 pacid=23145085 polypeptide=Lus10025579 locus=Lus10025579.g ID=Lus10025579.BGIv1.0 annot-version=v1.0 MKIQCDVCEKAPATMICCADEAALCAKCDVEVHAANKLASKHQRLLLDSLSDKLPRCDICQEKTAFIFCVEDRALFCKDCDEPIHSAGSLSANHQRFLAT GIRVALTSSCSNYTEKSCFEPPPNQSRPQQVPAKLQPAQPQQQSSSFGSPWGVDDLLHFSDFGSSADKKEQMQMGEFEWLADMGLFGDQFTDEALAAAEV PQLPAVSPTVSFSSYKPTKSSGMPNKKQRVEIADEDDEYFMVPDIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	1.0	0.9543
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	1.4	0.9471
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	1.7	0.9418
AT3G55760			unknown protein		Lus10021897 [exp]	2.2	0.9361
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	3.5	0.9349
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	3.7	0.9341
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	4.5	0.9374
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	4.9	0.9324
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	6.3	0.9296
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	6.3	0.9161

Compare expression of checked genes

Lus10025579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.