Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07565 135 / 1e-38 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G60670 77 / 1e-16 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 77 / 3e-16 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT2G43470 46 / 9e-06 Protein of unknown function (DUF3755) (.1) AT1G68160 45 / 2e-05 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025582 [exp] 259 / 2e-87 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027045 [exp] 268 / 3e-86 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10027044 [exp] 221 / 2e-72 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10013072 [exp] 86 / 5e-19 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 85 / 8e-19 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 82 / 2e-17 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 79 / 2e-16 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10024224 [exp] 71 / 9e-15 ND / Lus10000123 [exp] 64 / 4e-13 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023300 [exp] 142 / 1e-40 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.014G197300 [exp] 135 / 1e-37 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 120 / 2e-32 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.010G097000 [exp] 86 / 7e-19 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.008G145100 [exp] 84 / 4e-18 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025581 pacid=23145127 polypeptide=Lus10025581 locus=Lus10025581.g ID=Lus10025581.BGIv1.0 annot-version=v1.0 ATGGCGAATCCATCAGGGAAGCAACTTCAAAATCGTAATCAGGATGCTCCGGCTAGTAATAATAACAACAATGATTCTTCGTCTTCACTCAACGGGAACA ATCCGGCTAACGGATATCTGGAGAGTTCGAATCCCACCGTCGCTGCTTTGAAGCATAATCCTGGCATCTCTAACGATTGGACTCCGGAGGAGCAGTCGAT ACTAGAGGATGGCCTTGCCAAGTATGCATCGGAGTCGAACATAGGCCGTTATTCAAAGATTGCTAAGCAGCTTCCGTGTAAGACAGTTCGAGATGTTGCG CTGCGTTGCAGATGGATGTCGAAGAAGGAGTCTAGTAAGAAGAGGAAGGAGGAAAACGTAAGAAGAGGCAAGGATAAGAAGGAAAAACTTACTGATGCAT CAACAAAGCCATCTTCTACTGTTGTCCGCCCTAATGCTCCTGCATATGGAAATACAGTGGCTCCTACTGACTATGATGATGGCATCTCTTTTAAAGGGTT TTTGTCATTCACAATACCTGCGCTTGCAACAGCCAAGATCCCTTACCACGCCAGGAAGCCAACTGAGTCGAGTCTAGGGCTTCTCCAACCCCGGGCTTTG GACGAAAACGTGATCAATGCACCCCGCCCGACAACGGGGCAGACCAAGCAGGCCTCGATTCCGGCTTCGCACGAGCACCCACTATGTCTAGCTGGTACAC GTCCTATCCACGCTACAATAAGGAAAATGACGATGTGGAAGTCAGGTCTTACAACGGAGGTTGAAGATCTGGACGAGAGTCGTCTTCTAGACTCTTGTGA TACAGGCGAGTTGACTCGAGGCGACTCGCCCAACACCATAGGAATCCCATCTGGTGAAGTTCCAGTCGACTTCATTGTAGAAGAAGAAGACCGGCTACCC TGTTTGTGTGTTTGCTTTCCGTTTAGTTCTTTCGGATTTCTAGTTGGGGTTCTGCAAGTCGGATCTTTTCAGTCTTAG
AA sequence Show only first row Show all	>Lus10025581 pacid=23145127 polypeptide=Lus10025581 locus=Lus10025581.g ID=Lus10025581.BGIv1.0 annot-version=v1.0 MANPSGKQLQNRNQDAPASNNNNNDSSSSLNGNNPANGYLESSNPTVAALKHNPGISNDWTPEEQSILEDGLAKYASESNIGRYSKIAKQLPCKTVRDVA LRCRWMSKKESSKKRKEENVRRGKDKKEKLTDASTKPSSTVVRPNAPAYGNTVAPTDYDDGISFKGFLSFTIPALATAKIPYHARKPTESSLGLLQPRAL DENVINAPRPTTGQTKQASIPASHEHPLCLAGTRPIHATIRKMTMWKSGLTTEVEDLDESRLLDSCDTGELTRGDSPNTIGIPSGEVPVDFIVEEEDRLP CLCVCFPFSSFGFLVGVLQVGSFQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07565			Protein of unknown function (D...		Lus10025581 [exp]	0	1
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	3.9	0.6839
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	28.1	0.5960
AT1G26580			unknown protein		Lus10037097 [exp]	33.4	0.5825
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	33.5	0.5938
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	46.3	0.5774
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	48.2	0.5676
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10029287 [exp]	59.0	0.5001
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	73.8	0.5188
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	80.8	0.5313
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	119.2	0.5121

Compare expression of checked genes

Lus10025581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.