Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67550 103 / 3e-23 unknown protein AT1G71110 79 / 4e-15 unknown protein AT2G25270 56 / 6e-08 unknown protein AT2G12400 52 / 1e-06 unknown protein AT1G80540 47 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011544 [exp] 113 / 2e-26 AT5G67550 362 / 3e-120 unknown protein Lus10013492 [exp] 105 / 1e-23 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 62 / 1e-09 AT1G71110 578 / 0.0 unknown protein Lus10038102 [exp] 58 / 2e-08 AT2G25270 468 / 5e-161 unknown protein Lus10008028 [exp] 57 / 3e-08 AT2G12400 641 / 0.0 unknown protein Lus10034641 [exp] 57 / 3e-08 AT1G71110 587 / 0.0 unknown protein Lus10008813 [exp] 55 / 1e-07 AT2G12400 616 / 0.0 unknown protein Lus10001929 [exp] 52 / 1e-06 AT2G25270 457 / 3e-156 unknown protein Lus10014341 [exp] 52 / 1e-06 AT2G25270 352 / 7e-116 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023400 [exp] 329 / 6e-106 AT5G67550 182 / 3e-51 unknown protein Potri.007G132601 [exp] 314 / 4e-100 AT5G67550 189 / 8e-54 unknown protein Potri.010G115500 [exp] 73 / 2e-13 AT1G71110 646 / 0.0 unknown protein Potri.018G023200 [exp] 71 / 1e-12 AT2G25270 595 / 0.0 unknown protein Potri.006G060600 [exp] 56 / 5e-08 AT2G12400 579 / 0.0 unknown protein Potri.006G258700 [exp] 54 / 3e-07 AT2G25270 590 / 0.0 unknown protein Potri.018G120200 [exp] 52 / 1e-06 AT2G12400 596 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025583 pacid=23144995 polypeptide=Lus10025583 locus=Lus10025583.g ID=Lus10025583.BGIv1.0 annot-version=v1.0 ATGAAGGACAAGGCTGATGCTCTTTCTGCTGCTCGATTCCCTGGTTGGCCAGGGGAGTTGTTCTGTCAATCTATTGGTTCCTCTCTATGGGTCAGCAGCG GGATGTTGTCAACGGCCGGAAACCATAGGCCACGTGAAGTAACAGTTGGGCAGCCGCCATTAATCATCTTGCTAGGGATAGTCATAGTAGCCGCCTCCTT CTTTAATTTGGTCTCAGTCGTCGCAGCGCAGCCAACCACACCAGCCCGCCGCCACTCCAACGGCGCCGGCAACGTTGTTCCCAATCAATGGCGGTCGTCT TCGAGTCATGTCGACGACGGCACGGTAAGGGTAGACCCGCTGGATAGCTTCAACAAGTACAGAGGAGGATTCGATATCACTAACAAGCACTACTGGACCT CGACTGCATTTACAGGCGTATACGGATACGCCATTGCTGGCTTCTGGCTACTGGCCGCCTTGTCGTACGGAGCTTTCAAGCTCATCGTTGCTCTTCTCTG CTGCAAATCTAGACGACGAATCGAAAGGCAAGATCAAGATCAGACCAGCAAATTACGATCTAGTCCTCTTGATAACCATAGTTCTACCGTCCGTAGCCAC TCTGTTCTCGTTGCCCTTCTCGTCATTCTTTTGGCAATAATTGTGGCAAGTGGGGTGGCGATCGGAGGGAGCGCAGAGTCCAACAACAAGGCGAGAAAGG CGGTCAACATCATCATCCACACTGCTGGCGACGCCTCCGAGACAATCTACAACGCCACGTCAGCCATGACCGAGATCTCACGTACCCTTGTCGTAACGGC CGCCAACCAATCCCCGGCGGCCGAGGCGGCAGCCTCCGCCTCCGCGTTCCTAGCTACCACTTCCAGGAGGCTTGACGCCGAAGCTGCCAACATCCAGAAG GAAGCCAGAGACAACGAGCGGCTCATCAAATTGGGCCTCACCGTTGTCTACGTCATCACCGTCGTCGCCGTCTCGGTCAACTTGGCAGCCGCGTTGGCTC TTTCAGTTTGTGGGATACTGAGGATTAGGAGAGCTATTTCTTGGCTTTTCTGGTTGTGCTGGTTGCTGATGGTCATCTCCTGGGTTCTCTTTGGGATCTA TTATTTCTTACAAAATTTTTCAAAGGACACGTGTAACGCGCTGGAGAAGTTCGAGCAAGATCCATACGGCAGCAGCCTGAGCTCAATGGTCCCCTGCGAC GCATTGGAATCGGCCAACCCGATCCTAAACGAAGTGAGCGAAGGGATATACGACATCGTTTCAAGGATAAACGACGCCGTTTCAGCAGTCCCTTCGTCAA TCACCAACAACGTCCAGATCTGCAGCCCTTTCTCGCCGCCCCCAAATTACCACTACAGAGCTTACAACGCCGACAACTGCCCTCCTTCTTCGATCCCCAT CGGCCAAATCCCTAAGGTGCTGGAGCCGTATCTGTCGGGGAGCGATTACAACATAGTGGAAGGATACGCTAGCTCGATCCAGAGCCTAGTGGACGCGTAC CCTGGGATGCGGAGTCTAGTGGAATGCGAATCGGTTAGGGTTTCGCTTTCGGAGATCGTGTCCCGCCATTGCCGGCCGCTGAAGAGGAATGTGAAGATTA GTTGGCTAGCGTTGGTTTCGCTGTCTTCTCTCGACGTGATGCTTCTTCTTCTGGTTGCAGTGGTAGGCAAGAGGATGGCGTCTTCACGGAATACCGCCGT CGAAGATCATGAAGCGGCGTCGGAATTTCCGCCGCCGGCTGCTTTGAGCCGTTCTTCGTCGGAGAAGGAGCGTGCCGGCGTTTGA
AA sequence Show only first row Show all	>Lus10025583 pacid=23144995 polypeptide=Lus10025583 locus=Lus10025583.g ID=Lus10025583.BGIv1.0 annot-version=v1.0 MKDKADALSAARFPGWPGELFCQSIGSSLWVSSGMLSTAGNHRPREVTVGQPPLIILLGIVIVAASFFNLVSVVAAQPTTPARRHSNGAGNVVPNQWRSS SSHVDDGTVRVDPLDSFNKYRGGFDITNKHYWTSTAFTGVYGYAIAGFWLLAALSYGAFKLIVALLCCKSRRRIERQDQDQTSKLRSSPLDNHSSTVRSH SVLVALLVILLAIIVASGVAIGGSAESNNKARKAVNIIIHTAGDASETIYNATSAMTEISRTLVVTAANQSPAAEAAASASAFLATTSRRLDAEAANIQK EARDNERLIKLGLTVVYVITVVAVSVNLAAALALSVCGILRIRRAISWLFWLCWLLMVISWVLFGIYYFLQNFSKDTCNALEKFEQDPYGSSLSSMVPCD ALESANPILNEVSEGIYDIVSRINDAVSAVPSSITNNVQICSPFSPPPNYHYRAYNADNCPPSSIPIGQIPKVLEPYLSGSDYNIVEGYASSIQSLVDAY PGMRSLVECESVRVSLSEIVSRHCRPLKRNVKISWLALVSLSSLDVMLLLLVAVVGKRMASSRNTAVEDHEAASEFPPPAALSRSSSEKERAGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67550			unknown protein		Lus10025583 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	1.0	0.9971
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	2.0	0.9892
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	3.0	0.9910
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	3.2	0.9924
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	3.9	0.9884
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	5.1	0.9810
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	5.2	0.9841
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	5.5	0.9854
					Lus10041164 [exp]	6.6	0.9820
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	10.0	0.9710

Compare expression of checked genes

Lus10025583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.