Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43400 276 / 2e-85 ETFQO electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027045 [exp] 209 / 2e-61 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027500 [exp] 430 / 2e-145 AT2G43400 951 / 0.0 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [flax] [poplar] 4Fe-4S PF05187 [flax] [poplar] ETF_QO Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CL0063 [flax] [poplar] NADP_Rossmann PF01946 [flax] [poplar] Thi4 Thi4 family
Representative CDS sequence Show only first row Show all	>Lus10025584 pacid=23145131 polypeptide=Lus10025584 locus=Lus10025584.g ID=Lus10025584.BGIv1.0 annot-version=v1.0 ATGATGAATAGGCTAGCACTTCCATTACGCCGGAAATCCAAATCCTCCGCTTCGTCATCCTTCTCTTGGCTACGAACTTCAGCGACATCATCTCACACTC GTTCACTCCCCGGTGCTTCCGATTCCGTCACGACTAGATCCTTAGTTCCACTACAATCCCTAACTTCGTCTTATTTGTTTCGGTCCTGCTATCGGATTTC GCAACCACGGACAAGGTTTAGTACGTATTCGGCGAATTTGACCGATTCGAGGGTATATGGAAGAAATGTTAGGGGCTTTTGCAGCGAGGTAGTAGACAGG GAGTCTATGGAATATGATGTTGTGATCGTTGGAGCTGGGCCTGCTGGCTTGTCAGCGGCGATAAGATTGAAACAGTTGTGCAGTGAGAAGGGTGTTGATT TGTCGGTCTGCGTTGTTGAGAAGGGCGCAGAAGTTGGTGCTCACATAATATCTGGAAATGTCTTTGAGCCTCGTGCGTTGGATGAACTTCTACCAGAATG GAAAAAAGAAGAGGCACCTATTACTGTCTCAGTTTCTTCTGACAAGTTCTGGTTTCTTACAAAGGATCGTGCATTTTCACTTCCATGTCCGTTTGATAAC AAAAATAACTACGTCATCAGCATATCTAGTAGTATGCAGATTGCAGACACATCCCATGAAATATGCTCAAATAAAATTATCAAGAAGTACAAATTGAGAG AAAAGCGAAATGCTCAACATCAGACATATGCATTAGGAATCAAAGAGGTTTGGGAAATCGACGAGAGTAAGCATAAACCTGGTGCTATTATTCACACATT GGGTTGGCCGTTAGATAAAAAAACATACGGAGGTTCATTTCTGTACCACATGAATGAAAAACAGGTTGCCCTAGGTCTGGTGGTGGCTCTAAACTATCAG AATCCTTATTTGAATCCATATGAAGAATTCCAGAAACTAAAGCATCATCCTGCCATCAAACCAATTCTTGAGGACGGGACTGTTATTCAATATGGAGCGC GTACTTTAAATGAAGGTGGTATTCAGGCTTTTGATCACGGGCTTATCCCTGGATTAGCTGTGAGTGCAGTGGAACACTACTTGTTCAAAGGGAAGTTGCC ATTTACTCTGAAGCACGGAAAACCTGATCATGAAGCGACAGACGTTTCAAGTCTGCACTCGCGGATTGAATATCCAAAGCCTGATGGAGTTCTAACATTT GACGTCCCAACATCTCTCCACAGGAGCAACACAAACCATGATCATGATCAACCACCACATCTTAAACTGAGGGACCCTGCCATCCCTTCTCAAGTCAATT TGCCGGAGTACGATGGGCCCGAGTCACGATATTGTCCTGCTCGTGTATACGAGTACAACCCAGATGAGAAAGGTGAGTTGAAGCTACAGATCAATGCTCA GAATTGCTTGCACTGCAAGGCATGTGACATCAAGGACCCAAAGCAAAACATCGAATGGACAGTTCCAGAAGGCGGCGGCGGCCCTGGTTACTCAGTTATG TAA
AA sequence Show only first row Show all	>Lus10025584 pacid=23145131 polypeptide=Lus10025584 locus=Lus10025584.g ID=Lus10025584.BGIv1.0 annot-version=v1.0 MMNRLALPLRRKSKSSASSSFSWLRTSATSSHTRSLPGASDSVTTRSLVPLQSLTSSYLFRSCYRISQPRTRFSTYSANLTDSRVYGRNVRGFCSEVVDR ESMEYDVVIVGAGPAGLSAAIRLKQLCSEKGVDLSVCVVEKGAEVGAHIISGNVFEPRALDELLPEWKKEEAPITVSVSSDKFWFLTKDRAFSLPCPFDN KNNYVISISSSMQIADTSHEICSNKIIKKYKLREKRNAQHQTYALGIKEVWEIDESKHKPGAIIHTLGWPLDKKTYGGSFLYHMNEKQVALGLVVALNYQ NPYLNPYEEFQKLKHHPAIKPILEDGTVIQYGARTLNEGGIQAFDHGLIPGLAVSAVEHYLFKGKLPFTLKHGKPDHEATDVSSLHSRIEYPKPDGVLTF DVPTSLHRSNTNHDHDQPPHLKLRDPAIPSQVNLPEYDGPESRYCPARVYEYNPDEKGELKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	0	1
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	2.4	0.8583
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	3.0	0.8759
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	3.6	0.8023
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	4.0	0.8238
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	4.6	0.8382
AT1G59650		CW14	Protein of unknown function (D...		Lus10005831 [exp]	5.8	0.7561
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	6.3	0.8150
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10043402 [exp]	7.3	0.7386
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	7.3	0.8265
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	8.0	0.7864

Compare expression of checked genes

Lus10025584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.