Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24070 386 / 2e-134 Peroxidase superfamily protein (.1) AT2G43480 385 / 4e-134 Peroxidase superfamily protein (.1) AT5G17820 229 / 5e-73 Peroxidase superfamily protein (.1) AT3G03670 223 / 9e-71 Peroxidase superfamily protein (.1) AT5G06730 204 / 1e-62 Peroxidase superfamily protein (.1) AT5G51890 199 / 2e-61 Peroxidase superfamily protein (.1) AT5G42180 198 / 5e-61 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G19890 197 / 9e-61 Peroxidase superfamily protein (.1) AT2G41480 197 / 3e-60 Peroxidase superfamily protein (.1) AT5G22410 196 / 3e-60 RHS18 root hair specific 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004804 [exp] 468 / 2e-166 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1) Lus10022962 [exp] 303 / 2e-103 AT5G24070 293 / 1e-99 Peroxidase superfamily protein (.1) Lus10018375 [exp] 231 / 1e-73 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10043010 [exp] 226 / 1e-71 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 221 / 1e-69 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10004859 [exp] 220 / 2e-69 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10005679 [exp] 215 / 2e-67 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10001324 [exp] 209 / 6e-65 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 208 / 1e-64 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132800 [exp] 442 / 1e-156 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 231 / 1e-73 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.006G069600 [exp] 221 / 6e-70 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 209 / 7e-65 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 208 / 8e-65 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 204 / 5e-63 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 203 / 1e-62 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.007G067200 [exp] 204 / 3e-62 AT4G33870 253 / 2e-80 Peroxidase superfamily protein (.1) Potri.001G218450 [exp] 201 / 5e-62 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 201 / 5e-62 AT5G22410 280 / 1e-92 root hair specific 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10025586 pacid=23144996 polypeptide=Lus10025586 locus=Lus10025586.g ID=Lus10025586.BGIv1.0 annot-version=v1.0 ATGATAAGGATGTCGTCGTTGTTATGGGTGGTGGTGGCGGCGGTGGTGATGATGGTGGCGGTGGAAGAAGGCGGTGGGGGGATGGTGGAGGGGGCGATAG GGCTGCAGCCGCCGGTGAAGTTGAAGTGGCATTACTACCGCCTGAACACGAGCTGCAAGTACGCGGAGGAGTACGTGAAGCACCAGGTCAAGATTTATTG GAACAAAGACAAATCCATCACTGCCAAGCTCCTCCGCTTGCTCTACTCCGATTGCTTCGTCACCGGTTGTGATGCGTCGATATTGCTGGACGGGCCGAAA TCGGAGAAAACAGCTCCGCAGAACGCAAGGCTTGACGGGTTCGAGCTCATCGACCGAATCAAGAAAGTGGTGGAGGCCCTTTGTCCGGGTGTCGTCTCAT GTGCCGACATCCTCAACCTCGCCACCAGAGACGCTGCTCACTTGGCGGGATGGCCGTCGTACCCAGTATTCACCGGAAGAAGGGATGGGATGACATCATC CGCGTCGTCGGTGGATCTGCCGTCGGCGTCGATCTCCAACAAAGCTGCTTTGGCTTACTTCAAGTCTAGAGGCCTGGATGTTCTTGACATGGCAACCCTT TTAGGAGCACACTCAATCGGAAAGACTAACTGCGTCAACGTAGCGGACAGGCTCTACAACTTCAACAAAACAGGGAAACCAGATCCAACCATGAACAAAC AATTCGCCGATCAATTACAAAAGGCATGCCCTAAGACCAACAACTCTTCACCCACCAGCAACTGGGTTTATCTAAACCCAGATGCATCAGCACCCCAATA TCAGCTGTCAAATTCTTACTACAAGAGGGTTTTGGCTTACAAATCCGCGCTGGGAGTTGACCAGCAGTTGCTCTACAGCAGCGACACCAAACAGATCACC GGCGAGTACGCCAACGACAAAAAGAACGGGACTGAAAACTGGAGGAGATCGCTTACTCTGTCCATGAGCCGTATGGGGAACATTAACGTGTTGACTGGTT CTGCTGGCGAGATTCGTAGGAATTGCCGCTACACCAACAAAAAAGCCTAG
AA sequence Show only first row Show all	>Lus10025586 pacid=23144996 polypeptide=Lus10025586 locus=Lus10025586.g ID=Lus10025586.BGIv1.0 annot-version=v1.0 MIRMSSLLWVVVAAVVMMVAVEEGGGGMVEGAIGLQPPVKLKWHYYRLNTSCKYAEEYVKHQVKIYWNKDKSITAKLLRLLYSDCFVTGCDASILLDGPK SEKTAPQNARLDGFELIDRIKKVVEALCPGVVSCADILNLATRDAAHLAGWPSYPVFTGRRDGMTSSASSVDLPSASISNKAALAYFKSRGLDVLDMATL LGAHSIGKTNCVNVADRLYNFNKTGKPDPTMNKQFADQLQKACPKTNNSSPTSNWVYLNPDASAPQYQLSNSYYKRVLAYKSALGVDQQLLYSSDTKQIT GEYANDKKNGTENWRRSLTLSMSRMGNINVLTGSAGEIRRNCRYTNKKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	0	1
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	1.0	0.9757
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	2.4	0.9642
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	2.8	0.9509
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	5.0	0.9557
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	5.1	0.9326
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	6.0	0.9407
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	6.0	0.9580
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	6.3	0.9566
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	6.6	0.9481
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	10.2	0.9522

Compare expression of checked genes

Lus10025586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.