Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59780 487 / 7e-164 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G23060 84 / 4e-17 CaS calcium sensing receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027050 [exp] 867 / 0 AT3G59780 562 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10009609 [exp] 71 / 1e-12 AT5G23060 466 / 3e-164 calcium sensing receptor (.1) Lus10000867 [exp] 71 / 1e-12 AT5G23060 466 / 2e-164 calcium sensing receptor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128300 [exp] 567 / 0 AT3G59780 610 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G097901 [exp] 107 / 2e-27 AT3G59780 150 / 3e-43 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G095833 [exp] 107 / 3e-27 AT3G59780 153 / 2e-44 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G182410 [exp] 105 / 3e-26 AT3G59780 126 / 2e-34 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G098950 [exp] 100 / 5e-24 AT3G59780 95 / 2e-22 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G098001 [exp] 87 / 1e-18 AT3G59780 91 / 8e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G052200 [exp] 84 / 4e-17 AT5G23060 490 / 6e-174 calcium sensing receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10025587 pacid=23145050 polypeptide=Lus10025587 locus=Lus10025587.g ID=Lus10025587.BGIv1.0 annot-version=v1.0 ATGCTGTCCGTTTGCTCTGCAACTCATTGTTGCTCTTCCCATTCTCAGATTTCATTATTGGGAGCCCCGCTTTCCATTTGCCCTTACCAAAAGGATGCCT ATTTCAGGAGCTTCCATGAAGAAAGAATACAACCATTTCCGTCATGGAATGTAAAGCATCATCAAAGAGTATCGTCGTCCTTCAGGACGCAAGCTGCAAA GTCTGTCTACTCCATTGTTGAAAGCAATTTTCCAGCTTCATCAGTGGCTTTAACTGAAAGTACCTCCTACTTAGAGGACACTCAATGCAGCTTTTACAGC GGAAGAGACATTTTGGAGCAGTACAACTTGTCTGCTGCAGATGGTGAGGTGGATTTTCCTGGCCTTTCAAGTGAAAAGATGGACACTTTGATAAAATCCA TTGAACCACAAACCGTAACTTTCGGTGATATAGGGGGAGAGAACACAAACTTGGAATCTACCTCAAGCCTTGTCAGCGATAGTTCATCGTTTAGTGCGCC AGCTAGCTTTGATGATCTTTTCACAACGGTACAGGACTCTGTAAATAAAGGGGAGGAATTTGTGACAAGCTCACTAAACTCAATCAACTCATCACTGACC TCCATTACTAAAAGTGCATCCCAAGCGGTAGATGATATCTGGAGCAGAGTTTTTACAAATATTGATCAAACAGGAGAACTCGCTGGCAACAGATTGTCTG GTTTGTTAAATGATTCAAAAGATGCCACAACCAAACTAACCGGAGTTTCGGCTGATGTTTTGAGACGGACGATTGTTATAGTAGAGGATTCTATTGTGAA GGGGGCTTATTTTGTTGTTTATTCTTATGGCTCTGCAAAAGAACTGCTTCCTCCAGAGATCAGGGATGCAGTGAATGTCACTGAAGATAGAGTTACTCAG GTTTTGAGGCCTGTCGGAACAACTTTACAGGAGGTCTCCACTGCTATTGGTGGGCTGGAGAGAAGATTTGGCTTGGATTCAGATGATCCTGTTATCACAT TCATTGTTTCCTTTGGATCATTGGGTGCTTTATGGGCTTTTTATTGGATATGGACGTATTCTGGATATGCTGGAGAGTTATCTCCCGAAGCAACTTTAGA ATTCTTGAAATCAGAGAAGAAAGCTATGCTCATTGATGTCCGCCCTGAGGCAAGTGCCACTGCATTTTTCATGCGAGTTCTTAGAGAGAGAGACGGAGTT CCTGATCTCAGGCGAGCAACTCGTTCTCGCTATGCCAGTGTCACTTTACCTGAGGTTGATAACTCAGTCCGAATGTTGTTAAGAGGTGGAAAAGAGATTG AAGATTCCTTAATTGCTGCAGTCATAAGGAACTTAAAAGCTGTTCAGGACAGGTCAAATGTCATAATTATGGATGCTGATGGGACTGCCTCCAAGGGCGT TGCAAGATCATTGAGCAAGCTTGGCGTTAAGAAAGCATACTTGGTCAAAGGTGGGTTCAACTCTTGGGTGAAACACGACCTCAGAATCAAGAAACTCAAA CCTGAGACAACATTGACCGTGCTCAATGAGGAAGCAGAAGCAATCTTGGAAGGGGTCAGCCCTTTACAAGTAATTGGTTACGGAGTGTGCGTAAGTAGTT GGACTGAACTCAAAACAGCGAGCTTCTGTTTTAACATTTCTGATATACTGAATAGCCAAGTGAGAATCTCTGGTTGCATGACTGCAAGTTTCAGCAATTC TGCTAATAAATTCATTTCTTCAATCGACAGGGTTTGCTTGCAGCCTCATATGCTCTACTCGACAATCTATCTCCGGTTAGCTACCTACGAATCGGCAGAG GATTTGACCGAAGATGTCAGCTTGTTGCTAGTTCCTGTTAAACTGGGGAGTAGGGCATTTTCATGGGCTGCCGAAAAGTTGGAGACCAATGGGAACGGAC TCCCGACCTCGCCTTCTTCATCTGACGTTCAAAACCGCGTGCTTCAAGCCGCTGCAAAGCATGAATCTCAACCATCTTCCGAGACTGAAGGGACCCAAAA TTCGTCAGCTGATACAGTGATGAGTGAAAATGCTGATCTTTCCGAAGCATAA
AA sequence Show only first row Show all	>Lus10025587 pacid=23145050 polypeptide=Lus10025587 locus=Lus10025587.g ID=Lus10025587.BGIv1.0 annot-version=v1.0 MLSVCSATHCCSSHSQISLLGAPLSICPYQKDAYFRSFHEERIQPFPSWNVKHHQRVSSSFRTQAAKSVYSIVESNFPASSVALTESTSYLEDTQCSFYS GRDILEQYNLSAADGEVDFPGLSSEKMDTLIKSIEPQTVTFGDIGGENTNLESTSSLVSDSSSFSAPASFDDLFTTVQDSVNKGEEFVTSSLNSINSSLT SITKSASQAVDDIWSRVFTNIDQTGELAGNRLSGLLNDSKDATTKLTGVSADVLRRTIVIVEDSIVKGAYFVVYSYGSAKELLPPEIRDAVNVTEDRVTQ VLRPVGTTLQEVSTAIGGLERRFGLDSDDPVITFIVSFGSLGALWAFYWIWTYSGYAGELSPEATLEFLKSEKKAMLIDVRPEASATAFFMRVLRERDGV PDLRRATRSRYASVTLPEVDNSVRMLLRGGKEIEDSLIAAVIRNLKAVQDRSNVIIMDADGTASKGVARSLSKLGVKKAYLVKGGFNSWVKHDLRIKKLK PETTLTVLNEEAEAILEGVSPLQVIGYGVCVSSWTELKTASFCFNISDILNSQVRISGCMTASFSNSANKFISSIDRVCLQPHMLYSTIYLRLATYESAE DLTEDVSLLLVPVKLGSRAFSWAAEKLETNGNGLPTSPSSSDVQNRVLQAAAKHESQPSSETEGTQNSSADTVMSENADLSEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	0	1
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	1.0	0.9600
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	3.0	0.9444
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042758 [exp]	4.2	0.9381
AT5G42765			unknown protein		Lus10032714 [exp]	4.5	0.9417
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	5.3	0.9419
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	5.8	0.9466
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	7.4	0.9369
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	7.7	0.9375
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	7.9	0.9408
AT3G45050			unknown protein		Lus10041331 [exp]	9.2	0.9413

Compare expression of checked genes

Lus10025587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.