Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05730 212 / 2e-71 Eukaryotic protein of unknown function (DUF842) (.1) AT2G31725 207 / 9e-70 Eukaryotic protein of unknown function (DUF842) (.1) AT2G43720 176 / 3e-57 Eukaryotic protein of unknown function (DUF842) (.1) AT1G05740 133 / 2e-40 Eukaryotic protein of unknown function (DUF842) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027051 [exp] 308 / 3e-109 AT1G05730 218 / 8e-74 Eukaryotic protein of unknown function (DUF842) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127400 [exp] 233 / 8e-80 AT2G31725 236 / 4e-81 Eukaryotic protein of unknown function (DUF842) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05811 [flax] [poplar] DUF842 Eukaryotic protein of unknown function (DUF842)
Representative CDS sequence Show only first row Show all	>Lus10025588 pacid=23145028 polypeptide=Lus10025588 locus=Lus10025588.g ID=Lus10025588.BGIv1.0 annot-version=v1.0 ATGGATCACATAGCAGCAGCTCAGCAGGCAGCTCTGCAACAGCAGATTTCAGAGAGACTGAAGCGGAAGCTTGAACAAGTCAATTCAGCCGCTCAGTCCC AGCTCTCCCCTGTTCAAGACCACATCAATTTCACCCTTCAGCAAGCATATTTCAAATGCGCTTACGAATGCTTTGATAGGAGAAGGAAACAGGAAGAAAT AGCCAGTTGTGTTGAGAATTGCAGTGTCCCAGTCCTCAATGCCCAGCATCATTTTGAGGATGAGATGTCCAAGTTTCAGGCAAGTTCTATTTGCCCTTTT CCTCATCTGGAAAGGATGAACCGGTCTCTTATGGTGTGCCAAGACAAGTTTGAAGCTGCTAAGCTGCAGCAAGTTGGGTCAGATGCCATGAACACATTGG AGTCCTGTGTAGACGGAGCGATTCAAGAGAACGCCAGCACACTTCCGCACATAGTCCGGAAGTTGAAAACGTCTCTTGCCATCAGAGATGAGGTGTAG
AA sequence Show only first row Show all	>Lus10025588 pacid=23145028 polypeptide=Lus10025588 locus=Lus10025588.g ID=Lus10025588.BGIv1.0 annot-version=v1.0 MDHIAAAQQAALQQQISERLKRKLEQVNSAAQSQLSPVQDHINFTLQQAYFKCAYECFDRRRKQEEIASCVENCSVPVLNAQHHFEDEMSKFQASSICPF PHLERMNRSLMVCQDKFEAAKLQQVGSDAMNTLESCVDGAIQENASTLPHIVRKLKTSLAIRDEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	0	1
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	1.7	0.7889
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	2.8	0.8185
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	3.2	0.8066
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	5.7	0.7710
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10024913 [exp]	11.2	0.7798
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	14.8	0.7877
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	15.5	0.7463
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	16.5	0.7743
AT3G49055			unknown protein		Lus10027489 [exp]	16.5	0.6837
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	17.3	0.7601

Compare expression of checked genes

Lus10025588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.