Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59760 517 / 0 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT2G43750 515 / 0 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 422 / 6e-148 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 401 / 4e-140 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 399 / 7e-139 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 390 / 3e-135 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 379 / 6e-131 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G03630 365 / 2e-124 CS26 cysteine synthase 26 (.1) AT3G61440 361 / 3e-123 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT1G55880 111 / 5e-27 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027056 [exp] 694 / 0 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10015947 [exp] 429 / 2e-150 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 427 / 1e-149 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 402 / 7e-140 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10020342 [exp] 370 / 1e-126 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10014765 [exp] 362 / 2e-123 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10009521 [exp] 346 / 1e-116 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 310 / 5e-104 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 293 / 6e-97 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127800 [exp] 540 / 0 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.008G153300 [exp] 437 / 7e-154 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 434 / 8e-153 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 431 / 2e-151 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 425 / 5e-149 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 409 / 5e-143 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 403 / 1e-140 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 401 / 1e-139 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.019G045800 [exp] 375 / 3e-128 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.005G048200 [exp] 369 / 3e-127 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10025589 pacid=23145038 polypeptide=Lus10025589 locus=Lus10025589.g ID=Lus10025589.BGIv1.0 annot-version=v1.0 ATGTCATCCTCGTCTTCCTTAGCCATGAATCGGTTGACTTCTTCCCTCTGCAAATCCCGCGGCGCGCTTCTCCACCAATTCGATTCCTTCCTCAAACACC GCTCTTCCTCCTCCTCCCCACTCGCTTCTTTCCCTCGCCGGACAGTGGACCGCCGATTCATCACCAATGGAACGCCTATCGTCTGCAAGGCCGTCTCCGT CCAGTCTCCCAAGACCGCCACTGAAGGCGCCCTCAACATCGCCGACGACGTCACCCAGTTGATTGGGAAAACTCCTATGGTGTACCTTAACAGTGTGGTC AAGGGTTCTGTGGCGAACATTGCTGCCAAGCTGGAGATTATGGAGCCTTGCTGTAGTGTCAAGGACAGGATCGGATTAAGTATGATTGTTGATGCTGAAA AGCAAGGACTTATAACACCTGGAAAGAGTGTTCTGGTTGAACCCACAAGCGGTAACACAGGCATTGGGCTTGCATTTATAGCGGCATCAAGAGGATATAA ACTCATTTTGACAATGCCAGCATCAATGAGTATGGAAAGAAGGGTTCTTCTAAAAGCATTTGGAGCAGAACTTGTTCTAACCGAAGCACCAAAAGGTATG AATGGTGCAGTTCAGAAGGCTGAAGAAATTGTGAAAAAGACTCCAAATGCCTACATGCTTCAACAATTTGACAATCCAGCAAATCCCAAGGTCCACTACG AGACTACTGGACCAGAAATCTGGCAAGACACAAAGGGTAAAGTTGATATCCTTGTTGCAGGTATTGGCACCGGGGGAACCATTTCTGGTGTTGGTCGGTT CCTTAAAGAGAAAAACCCAAACATTCAGATAATTGGCGTGGAGCCTGTAGAAAGCAACATACTGTCTGGGGGAAAGCCAGGTCCTCACAAGATTCAAGGA ATCGGAGCAGGTTTCATACCAAAAAATTTGGACAGAGATCTAGTTAATGAAGTCATTGAGGTATCTAGCAGTGAAGCTATTGAAACAGCAAAGCAAGTAG CACTACAAGAGGGCCTATTGGTGGGCATATCTTCTGGTGCAGCTGCGGCTGCCGCGTTGCAGGTTGGAAAGAGGCCAGAGAACGCAGGGAAATTGCTTGC AGTTGTGTTTCCAAGCTTTGGTGAAAGATATCTGTCGACGGATCTGTTCTTGTCAATTCGAGAAGAAGTCGAGAAGCTTCAACCCGAGCAGTGA
AA sequence Show only first row Show all	>Lus10025589 pacid=23145038 polypeptide=Lus10025589 locus=Lus10025589.g ID=Lus10025589.BGIv1.0 annot-version=v1.0 MSSSSSLAMNRLTSSLCKSRGALLHQFDSFLKHRSSSSSPLASFPRRTVDRRFITNGTPIVCKAVSVQSPKTATEGALNIADDVTQLIGKTPMVYLNSVV KGSVANIAAKLEIMEPCCSVKDRIGLSMIVDAEKQGLITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTEAPKGM NGAVQKAEEIVKKTPNAYMLQQFDNPANPKVHYETTGPEIWQDTKGKVDILVAGIGTGGTISGVGRFLKEKNPNIQIIGVEPVESNILSGGKPGPHKIQG IGAGFIPKNLDRDLVNEVIEVSSSEAIETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLLAVVFPSFGERYLSTDLFLSIREEVEKLQPEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10025589 [exp]	0	1
AT2G31670			Stress responsive alpha-beta b...		Lus10034659 [exp]	1.4	0.9002
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	7.1	0.9031
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10024267 [exp]	7.7	0.8892
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	14.5	0.8938
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	17.9	0.8683
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	18.3	0.8895
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	20.3	0.8923
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	25.9	0.8837
AT3G53630			unknown protein		Lus10023752 [exp]	29.3	0.8870
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	30.0	0.8845

Compare expression of checked genes

Lus10025589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.