Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025590 pacid=23145100 polypeptide=Lus10025590 locus=Lus10025590.g ID=Lus10025590.BGIv1.0 annot-version=v1.0 ATGGACGCGTCTCCTCCAAGATGTGCTCCCCGAATTAGTAGTCGGGGTGTTGGTCCTCGCGGCGGGGGATCTAGCGGTGGTGGTTTGAAACCTGGCGGCG GGTGTTGGAGGTGTGGCGGTAGCGAGGTGGCTCGCGGTGGATTCGGGAGATCCCCGTTCGTCATGCCACACGTGGGTGTGGTCATAGCCCTTGGAGTCGG GGTTCCGTGCGGCGTCGAGATGGAGGAGTCAGGTCGGGCTCGTGGTGGGGGATCCGCCGATGGTGGTGGTTGGGGGCGTTGCGGTGGCCGCTGGGGAGGT GACGGCGTCTCGGAGCTGTGCAGCGGTAGTGGGGAGATCAGTGGCAGTAACGGGGAGGACCTGTTCTTCGTGCCGGTCGTGAGAGCCGGCATAGCTCCTG ATGAAGGAGCTCCGCAGAGGCAATGTCCCGTTGGGAAGATCGGAACAGGAGTGGGGGAGAGACATGGTCACGATTGA
AA sequence Show only first row Show all	>Lus10025590 pacid=23145100 polypeptide=Lus10025590 locus=Lus10025590.g ID=Lus10025590.BGIv1.0 annot-version=v1.0 MDASPPRCAPRISSRGVGPRGGGSSGGGLKPGGGCWRCGGSEVARGGFGRSPFVMPHVGVVIALGVGVPCGVEMEESGRARGGGSADGGGWGRCGGRWGG DGVSELCSGSGEISGSNGEDLFFVPVVRAGIAPDEGAPQRQCPVGKIGTGVGERHGHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025590 [exp]	0	1
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	2.4	0.7821
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	3.7	0.8188
					Lus10004308 [exp]	12.2	0.7791
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	13.0	0.7734
					Lus10027526 [exp]	18.4	0.7200
AT1G72490			unknown protein		Lus10013160 [exp]	22.2	0.6996
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	23.2	0.7301
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	26.7	0.7575
AT1G05270			TraB family protein (.1)		Lus10038419 [exp]	30.3	0.6843
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	50.4	0.6827

Compare expression of checked genes

Lus10025590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.