Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 50 / 3e-08 Protein of unknown function (DUF1278) (.1) AT3G03272 49 / 5e-08 Protein of unknown function (DUF1278) (.1) AT5G17340 45 / 1e-06 Putative membrane lipoprotein (.1) AT4G39340 38 / 0.0004 Protein of unknown function (DUF1278) (.1) AT2G21750 37 / 0.0007 Protein of unknown function (DUF1278) (.1) AT5G53742 37 / 0.001 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027057 [exp] 187 / 3e-62 AT1G76750 50 / 4e-08 Protein of unknown function (DUF1278) (.1) Lus10004598 [exp] 47 / 5e-07 AT1G76750 131 / 2e-39 Protein of unknown function (DUF1278) (.1) Lus10004548 [exp] 45 / 3e-06 AT1G76750 130 / 4e-39 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306600 [exp] 47 / 3e-07 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 45 / 9e-07 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 41 / 3e-05 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1) Potri.009G077000 [exp] 38 / 0.0006 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.003G191800 [exp] 37 / 0.0008 AT1G76750 115 / 7e-34 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10025591 pacid=23145058 polypeptide=Lus10025591 locus=Lus10025591.g ID=Lus10025591.BGIv1.0 annot-version=v1.0 ATGGCGAATCAGAAACTTTCCCTCCTACGCATACATACACTCCTCTTCATCCTCCTCGGTTTCCTCTTCCTGCCAGCGTGGCAGCAGCAGCAGCAGCAGC AGCAATATCCGGCGCCGGCGGCGTATTACCCACAATTTCCGACAGCCCGCCCGGCGCTGTGGGACCCGTACGTGTACGGGCAGTGCGTGGGGTCGTTTAT CGCGGAGGAATCTTGCACCGGTGAGATCATGTCGTCGTTCTGGACCGGTCGGGTTTACCTGGCGCCCGGTTGCTGCGACTCGGTCCGCCAGGTCAGCGAC GAGTGCATCCCGACGGCGTTTTCCTTGCTGGCGAATCCCTTCTTTGGTTACGCTCTAAAGGGTTACTGTGTAACTCGCCCTTGGATCCATTCGCTGCCTT CGCCAAAAGATTAA
AA sequence Show only first row Show all	>Lus10025591 pacid=23145058 polypeptide=Lus10025591 locus=Lus10025591.g ID=Lus10025591.BGIv1.0 annot-version=v1.0 MANQKLSLLRIHTLLFILLGFLFLPAWQQQQQQQQYPAPAAYYPQFPTARPALWDPYVYGQCVGSFIAEESCTGEIMSSFWTGRVYLAPGCCDSVRQVSD ECIPTAFSLLANPFFGYALKGYCVTRPWIHSLPSPKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76750			Protein of unknown function (D...		Lus10025591 [exp]	0	1
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	16.2	0.6374
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10037320 [exp]	29.8	0.5752
					Lus10033349 [exp]	34.6	0.5592
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Lus10015747 [exp]	47.4	0.5616
AT4G31880			unknown protein		Lus10002307 [exp]	49.2	0.5749
					Lus10014248 [exp]	54.4	0.5613
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	70.9	0.5598
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015865 [exp]	76.5	0.5006
AT5G01880			RING/U-box superfamily protein...		Lus10025145 [exp]	84.3	0.5017
AT5G10660			calmodulin-binding protein-rel...		Lus10042442 [exp]	92.3	0.5212

Compare expression of checked genes

Lus10025591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.