Plant FIBer expression Database

Lus10025594 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59680 97 / 7e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027060
[exp]
241 / 1e-81 AT3G59680 134 / 2e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G112300
[exp]
120 / 6e-34 AT3G59680 157 / 3e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10025594 pacid=23144981 polypeptide=Lus10025594 locus=Lus10025594.g ID=Lus10025594.BGIv1.0 annot-version=v1.0
ATGGCTTCTTCTCATTGGAGATCCATCCCCAAGTCTTCCTCACACCAGGTTACTTCTTCCCAGAGATTGTGGAGATTCCCAACCCCAAAGTCATCTTCTA
AAAGGACCCCACCTCAAACCAACAACCCTAATGACACCAACCCGAGCAAAGGCACAAATAAGCTAAGAAAGTGCACATCGACGAGGGTGGCGACATCGTT
CACTAGGGTTTGCCTCTGCGCGCCCATCTCCTCGTACAACGAGGTTTTCGGGGCGGAGTTTCCGCCGAGAAGAAGCTACAGTTATCCCAGGTCGTCATCG
TCCAAAGGGTTACTTGTGTCGCAAGAAAGGTCGGTGTCGTCCCCTCCTAATATTAATAATAACGTTCCTGCGAGGCTTAGCACCGAAGGTGGTGTTAGGA
GGCCGGTTTTTCGAGGGAAGTCGCTGAGGGATGATGTGTTGATGAGGAGATTTGTGCTCGAGGAAGAAGCAATGATGGAGGTTAGGAGAAGGAACAATCA
GATGGAGATTATTAGGAAGAGGAGTAGTATGGTTATGAGGAGGAAGAAGCTTGGTCCTAGCCGTTTGAGCAAATTGGTGATTGACGAGGTGGACGATGAA
GAAAGAAATTGA
AA sequence
>Lus10025594 pacid=23144981 polypeptide=Lus10025594 locus=Lus10025594.g ID=Lus10025594.BGIv1.0 annot-version=v1.0
MASSHWRSIPKSSSHQVTSSQRLWRFPTPKSSSKRTPPQTNNPNDTNPSKGTNKLRKCTSTRVATSFTRVCLCAPISSYNEVFGAEFPPRRSYSYPRSSS
SKGLLVSQERSVSSPPNINNNVPARLSTEGGVRRPVFRGKSLRDDVLMRRFVLEEEAMMEVRRRNNQMEIIRKRSSMVMRRKKLGPSRLSKLVIDEVDDE
ERN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59680 unknown protein Lus10025594
[exp]
0 1
AT5G50150 Protein of Unknown Function (D... Lus10042092
[exp]
3.2 0.8706
AT5G50150 Protein of Unknown Function (D... Lus10001248
[exp]
4.6 0.8352
AT1G69160 unknown protein Lus10019172
[exp]
6.3 0.8200
AT5G51920 Pyridoxal phosphate (PLP)-depe... Lus10015013
[exp]
7.4 0.7930
AT3G10910 RING/U-box superfamily protein... Lus10022743
[exp]
8.1 0.8164
AT3G54030 Protein kinase protein with te... Lus10017198
[exp]
8.7 0.8182
AT3G50780 unknown protein Lus10022484
[exp]
8.8 0.8124
AT5G39420 CDC2CAT CDC2C (.1) Lus10030692
[exp]
8.8 0.8422
AT5G52882 P-loop containing nucleoside t... Lus10039309
[exp]
11.2 0.7888
Lus10022013
[exp]
11.6 0.7883

Lus10025594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.