Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27420 619 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G31770 601 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 549 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT5G06530 465 / 5e-155 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G71960 455 / 3e-152 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 455 / 8e-151 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G13220 423 / 1e-139 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT3G55100 228 / 9e-66 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G01320 228 / 2e-65 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G37360 223 / 2e-63 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025597 [exp] 932 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 847 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034775 [exp] 590 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 585 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 572 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 569 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 551 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10015994 [exp] 474 / 3e-160 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10028704 [exp] 462 / 1e-154 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123200 [exp] 692 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.001G404000 [exp] 691 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 595 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 577 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.003G046800 [exp] 577 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.013G111900 [exp] 488 / 3e-165 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 484 / 9e-164 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.016G065900 [exp] 467 / 6e-156 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 436 / 6e-144 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 419 / 4e-138 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10025596 pacid=23145040 polypeptide=Lus10025596 locus=Lus10025596.g ID=Lus10025596.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATCATAGTGGCAGTGGAGGAAGATCAGAGTGGTTCAAGGAAGCCAACCGCCACGTCACCCTCAAGTTCGACGACATAGTCTACAAAGTCA AGCTTCCGCCGCCGTCGAAATCCTCAATCTGGCCGGCGTACAAAAAATCATCAGCCAAATCAGAAGAGAAGACAATCCTTAACGGAGTGACAGGTACAGT GTACCCAGGCGAAATGCTGGCAATGCTGGGCCCATCCGGGAGCGGCAAAACAACCCTCCTAACCGCACTCGGCGGAAAACTCGGACGCGGCGGCAATAAC GGAAAACTAAACGGCACCGTCACATATAACGGAGCTCCGTTCTCAAGCCAAATGAGACGGACGACAGGATTCGTTACTCAAGACGACGTCCTCTACCCTC AGTTAACGGTAACGGAGACCCTAATCTACACGGCTCTCCTCCGTCTACCAAACTCGCTGACTAGGAAAGAGAAAGTGGCACAAGCGGAAGGCGTGATATC CCAGCTGGGGTTGACCAAATGCAAAGGGAGCGTGATCGGCGGGGAGAATCGGAGAGGAATCTCCGGCGGGGAGAGGAAGAGGGTTAGTATCGGGCAGGAG ATGCTGGTGGACCCCAGCGTTTTGTTTCTCGACGAGCCGACTTCGGGGCTGGACTCCACTACCGCGCAGCGTATTGTGTCTACGGTGTGGGAGCTTGCGA AAAGTGGGAGGACGGTTGTGATGACGATTCATCAGCCGTCGAGTAGGCTGTTTTATATGTTTGATACGGTGCTTTTGTTGTCGGAAGGGAATCCGTTGTA CTTCGGGAGAGGCGGTGAGGATGTGATGGATTACTTCGCCGGCGTTGGGTTTGTTCCTTCCGTTCCGATGAACCCCTCCGACTTTCTTTTGGATCTCGCC AACGGAGTGTCATCGACGACCGAGGAGGAGGACGGAGAAGAGAAGCAGAGCAAAGTCAAGAATGCATTAGCTTCAGCCTACAGAAACAATCTGGCGGGGA AGTTGAAAGTAGAGATTCAATCCGGCGGCGAAGAATACAATAGAAAGAATAGGAGGGGGCAGGAATACTACTGCAACGGTAATAATAATAACAACAACGA GGAGCAGTCGAGTAATTTGGGATCGTCGTGGCCGACCACTTGGTGGCAGCAGTTCACAATACTGAGCTATAGAGGAGTTAAAGTACGCAAGTACGAGTCG TTTTCTGCATGCAGGATTTTCCAAGTATTCGCTGTTGCTATTCTCTGCGGCCTTCTGTGGTGGCAATCTGACGCTTCCCACCTCCAAGATCAGATAGGCC TACTATTCTTCTACACAGAATTCTGGAGCTTCTACCCACTAAGCGACGCCATCTTCAAATTCCCACAAGAACGCCGAATGCTAACAAAAGAACGCTCCGC CGGAATGTACAAGCTCTCATCCTACTTCATGTCAACCCTCATCAGCGACCTACCAATCTCGCTAGTCCTCCCCACCGCATTCGTCGTCGTAACGTACTGG ATGGCCGGGTTCAAACCGACCCCATCCCACTTCTTCCACACTCTCGCCGTCCTTTTATACGCCGTCCTTGCAGCCCAGGGTCTCGGCCTTGCCGTCGGCG CGCTGGTGATGAACCAGAGGAAGGCCACCGTTTTGGGATACGTGGTGATGCTGTCATTCTTTCTCACCTGCGGATTCTATATTCAACATGTCCCTCCCTT CATTGCTTGGGTTCGGTACATGTCGATACAGAAGCACAGCTTGAGGCTCCTCATCGGGTCTCAGTTCGACGCCGACGATGTGTACACTTGTGGAGTGGGA GTGCTGTGTAGGGTTGGGGATTTTGGTAGGGTGAAGAGCGTTGGGCTTGAGGGGCAGGGTTTATCGGCGGTTGCTTTGTTGGTTATGATTGTCGGGTATC GGCTTGTTGCGTTTCTTGCTCTTATGAGGATTGGGGAGGTCAAGTAG
AA sequence Show only first row Show all	>Lus10025596 pacid=23145040 polypeptide=Lus10025596 locus=Lus10025596.g ID=Lus10025596.BGIv1.0 annot-version=v1.0 MEEDHSGSGGRSEWFKEANRHVTLKFDDIVYKVKLPPPSKSSIWPAYKKSSAKSEEKTILNGVTGTVYPGEMLAMLGPSGSGKTTLLTALGGKLGRGGNN GKLNGTVTYNGAPFSSQMRRTTGFVTQDDVLYPQLTVTETLIYTALLRLPNSLTRKEKVAQAEGVISQLGLTKCKGSVIGGENRRGISGGERKRVSIGQE MLVDPSVLFLDEPTSGLDSTTAQRIVSTVWELAKSGRTVVMTIHQPSSRLFYMFDTVLLLSEGNPLYFGRGGEDVMDYFAGVGFVPSVPMNPSDFLLDLA NGVSSTTEEEDGEEKQSKVKNALASAYRNNLAGKLKVEIQSGGEEYNRKNRRGQEYYCNGNNNNNNEEQSSNLGSSWPTTWWQQFTILSYRGVKVRKYES FSACRIFQVFAVAILCGLLWWQSDASHLQDQIGLLFFYTEFWSFYPLSDAIFKFPQERRMLTKERSAGMYKLSSYFMSTLISDLPISLVLPTAFVVVTYW MAGFKPTPSHFFHTLAVLLYAVLAAQGLGLAVGALVMNQRKATVLGYVVMLSFFLTCGFYIQHVPPFIAWVRYMSIQKHSLRLLIGSQFDADDVYTCGVG VLCRVGDFGRVKSVGLEGQGLSAVALLVMIVGYRLVAFLALMRIGEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	0	1
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	5.1	0.9255
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	6.5	0.9169
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	11.9	0.9243
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	13.6	0.9195
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	16.0	0.9138
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	20.5	0.9215
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	23.4	0.9071
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	24.3	0.9195
					Lus10021752 [exp]	25.8	0.8766
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	26.5	0.9042

Compare expression of checked genes

Lus10025596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.