Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27420 662 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G31770 646 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 590 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT5G06530 513 / 1e-173 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G71960 499 / 2e-169 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 494 / 4e-166 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G13220 448 / 3e-149 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 253 / 3e-74 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G37360 242 / 5e-70 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55100 229 / 3e-66 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025596 [exp] 981 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 903 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034775 [exp] 636 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 629 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 613 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 610 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 583 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10015994 [exp] 512 / 4e-175 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10028704 [exp] 499 / 3e-169 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404000 [exp] 743 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 734 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 641 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 625 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 603 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.013G111900 [exp] 521 / 3e-178 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 514 / 2e-175 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.016G065900 [exp] 510 / 9e-173 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 486 / 2e-163 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 449 / 2e-149 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10025597 pacid=23145056 polypeptide=Lus10025597 locus=Lus10025597.g ID=Lus10025597.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATCAGAGTGGTTTGGATACAGAGTCCCAAGCTCCCCATTACGTATTCAAGGAATCCGGCCGCCACATCACCCTCAAGTTCGACGACGTAG TCTACAAAGTAAAGCAGCTGTCGCCGTCGAAATCCTCAGGCTGTTTGAGGAATATTTGGACGACGAAAGCTTGCAAATCATCATCCAAATCGGGAGAGAA GACGATCCTTAACGGAGTAACGGGGATAGTCCATCCAGGCGAGATGCTAGCAATGCTGGGCCCATCTGGCAGCGGCAAAACAACCCTCCTAACCGCACTC GGCGGAAAACTCGGCGGCGGCGGCAATAACGGAAAACTAAACGGAACCGTCACATATAACGGAGCCCCGTTCTCAAGCCGAATGAGACGGACGACGGGGT TCGTAACCCAAGACGACGTCCTCTACCCTCACTTAACGGTAACGGAGACCCTAATCTACACGGCTCTCCTCCGTCTCCCCAACTCCCTAACCAAACAAGA GAAAATCGCCCACGCGGAGGGCGTCATATCCCAGCTGGGGCTCACCAAATGCAAAGCGGGCGTGATCGGCGGGGAGAATCTGAGGGGAATCTCCGGCGGG GAGAGGAAAAGAGTTAGTATCGGGCAGGAGATGCTTGTGGACCCCAGCGTTTTGTTTCTGGACGAGCCGACTTCGGGGCTGGATTCCACTACGGCGCAGC GTATAGTGTCTACGGTGTGGGAGCTTGCGAAGAGTGGGAGGACGGTTGCCATGACGATCCATCAGCCGTCGAGTAGGCTGTTTTATATGTTCGATAAGGT GCTTTTGTTGTCGGAAGGGAATCCGTTGTATTTCGGGAGAGGCGGCGAGGATGTGATGGATTACTTCGCCGGCGTTGGGTTTGTTCCTTCTGTTCCGATG AATCCCTCCGACTTTTTGTTGGACCTCGCCAACGGAGTGTCGTCGACGACCGAGGAGGACGGGCAAGAAAACCAGACCAAAACTAAAAATGCATTAGCTA CGGCGTACAGAGACAATCTGGCGGGGAAGTTGAAAGTAGAGATTCAAGCCGGCGAAGAATACGACGGAAAGGATCATAGAAGTACTAACAAGAATGAGAA GGAGCAGTTGAGAAATTTGGGATCGTCGTGGCCGACGACATGGTGGCAGCAGTTCACAATATTGAGCGCTAGAGGAGTTAAAGTACGCAAGCACGAGTCT TTTGCTGGACTCAAGATATTCCAAGTGCTAGCAGTCTCCATTCTCTGTGGCCTTCTTTGGTGGCAATCCGACCCTTCCCACCTCCAAGATCAGATAGGGC TGCTATTCTTCTACTCAGCATTCTGGGGCTTCTACCCAATGTTCGACGCCATCTTCAAATTCCCACAAGAACGCCGCATGCTAACAAAAGAACGCTCCGC CGGAATGTACAAGCTCTCCTCCTACTTCATCTCCACCCTCATCAGCGACCTACCAATCTCGCTAGTCCTCCCCACCGCATTCGTCATCATAACCTACTGG ATGGCCGGGTTCAAACCCACCCCATCCCACTTCTTCCACACTCTGGCCGCCCTCTTGTACGCCGTCCTCGCCGCCCAGGGGCTCGGCTTCGCGATCGGCG CGCTGGTGATGGAACAGAGGAACGGCACCGTTTTGGGGTCCGTGGTCATGCTCTGTTTCCTTCTCGCCAGCGGGTTTTATGTTCAGCACGTGCCGGGGTT CATCGCGTGGGTTAAGCACGTGTCGATCGGGCAGCATAGTTTGCGGCTGCTTCTCGGGTCGCAGTTTAAGGGTGATGATTTGTATCCTTGTGGGGAAGGA GTGATGTGCAGAGTGGGGGATTATGGGATGATTAAGAGCGTTGGGCTTGAGCGGCAGGGGGTTTCTGTGGTTGCTTTGTTGGTTATGATTGTTGGGTATC GGCTTGTTGCGTATCTTGCTCTTATGAGGATTGGGGGAGGTTAA
AA sequence Show only first row Show all	>Lus10025597 pacid=23145056 polypeptide=Lus10025597 locus=Lus10025597.g ID=Lus10025597.BGIv1.0 annot-version=v1.0 MEEDQSGLDTESQAPHYVFKESGRHITLKFDDVVYKVKQLSPSKSSGCLRNIWTTKACKSSSKSGEKTILNGVTGIVHPGEMLAMLGPSGSGKTTLLTAL GGKLGGGGNNGKLNGTVTYNGAPFSSRMRRTTGFVTQDDVLYPHLTVTETLIYTALLRLPNSLTKQEKIAHAEGVISQLGLTKCKAGVIGGENLRGISGG ERKRVSIGQEMLVDPSVLFLDEPTSGLDSTTAQRIVSTVWELAKSGRTVAMTIHQPSSRLFYMFDKVLLLSEGNPLYFGRGGEDVMDYFAGVGFVPSVPM NPSDFLLDLANGVSSTTEEDGQENQTKTKNALATAYRDNLAGKLKVEIQAGEEYDGKDHRSTNKNEKEQLRNLGSSWPTTWWQQFTILSARGVKVRKHES FAGLKIFQVLAVSILCGLLWWQSDPSHLQDQIGLLFFYSAFWGFYPMFDAIFKFPQERRMLTKERSAGMYKLSSYFISTLISDLPISLVLPTAFVIITYW MAGFKPTPSHFFHTLAALLYAVLAAQGLGFAIGALVMEQRNGTVLGSVVMLCFLLASGFYVQHVPGFIAWVKHVSIGQHSLRLLLGSQFKGDDLYPCGEG VMCRVGDYGMIKSVGLERQGVSVVALLVMIVGYRLVAYLALMRIGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	0	1
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	4.5	0.9453
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	6.2	0.7754
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	6.5	0.9387
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10008844 [exp]	6.9	0.7441
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	8.5	0.9359
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001432 [exp]	9.6	0.8254
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	9.8	0.9359
					Lus10029261 [exp]	11.0	0.9359
AT5G56990			unknown protein		Lus10029528 [exp]	12.0	0.9359
					Lus10037868 [exp]	12.6	0.9348

Compare expression of checked genes

Lus10025597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.