Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01460 1351 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G26190 219 / 1e-60 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 207 / 1e-56 Phosphoribulokinase / Uridine kinase family (.1) AT3G27190 57 / 3e-08 UKL2 uridine kinase-like 2 (.1) AT5G40870 57 / 6e-08 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027063 [exp] 1731 / 0 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10030570 [exp] 224 / 3e-62 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 218 / 3e-60 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 217 / 9e-60 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 207 / 4e-56 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10022289 [exp] 46 / 0.0001 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130200 [exp] 1390 / 0 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 1385 / 0 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G110500 [exp] 223 / 4e-62 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 223 / 7e-62 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 207 / 2e-56 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.017G071200 [exp] 66 / 5e-11 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10025598 pacid=23144959 polypeptide=Lus10025598 locus=Lus10025598.g ID=Lus10025598.BGIv1.0 annot-version=v1.0 ATGGACGACGAGGTAGTCCAGCGGGTTCTCCAAGAAGGAGGTCGCGATTTCCTCAAGCAGTCTCCTTCCACTTCTTCCTCTTCTTCGTCCATCCTCCAAT CCCTCCCTCTCCACGTGTCCTTTGATCATGGATATTACCTGCTTGTCAAATCAATTCAAGAACTTCGGGAGAAAAAAGGCGGTGTTGTCATCGTTGGCAT CGGCGGTCCAAGTGGTTCTGGAAAAACCAGGAATGGAGTTGATGATTCCAATGACGCTGATTCGATTGATTTCGATGCACTAGTTCGAAATTTAGAGGAT TTGATGCAGGGGAAGGATACTTTCATACCTTTATTTGATTATCAACAAAAGAAGCGGGCTGGTTCAAAATTGATAAAGAGTGTTTCTTCTGGTGTTGTTA TAGTTGATGGTACGTATGCTCTACATACAAGATTGCGGTCTCTGCTTGATATACGGGTGGCTGTGGTTGGTGGAGTTCATTTTAGTCTTCTGTCCAAAGT TCGCTATGATATTGGAGATTCCTGCTCATTGGATTACCTTATTGATAGCATTTTCCCACTGTTTAGAAAGCATATAGAACCAGATCTTCACCATGCACAG ATCCGAATAAATAACAGCTTTGTCTCTTCATTCCGTGAAGCAATCTACAAGCTGAAATGCAGAAGCGAGTCATCAGGTGGATCTGCTTATGCATTTCAAG GAACGGAAACACAAATGGACCACTTTATAGAGATGTACCTTAGGCCTCCCGCTGCTAGTGAAGAAGCCCGAGTAAATGATTGGATTAAAGTGCGACAATC TGGCATTAGATACTATTTATCTCTAGGAGATCAGAGGATTGTTGACAAAAACTTCATTATCCGGCCTAAAGCTGAGTTTGAGGTTGGAAGAATGACACTT GGCGGATTGCTGGCTTTGGGGTACAATGTTGTTGTGAGTTATAAACGGGCATCTACATCTGTTACCAATGGTTTTCTTTCGATATCACTGGAGACAATTG ATACTCTCAACGAGACATTCTTCGTATTGCGAGGAACAAATAGGAAAGCTGTTGGTGCAGAAGCGCTGAAAATTGGCATCAGTGGACCTTGGATCACTAA GTCATATCTTGAAATGATTCTTGAGAGAAAAGGAGTACCACGGCTAAATACTCCACCACTTATATCTGCCACTCCTACTACTAGTGGCGAGGAAGGGACA ATTGCTGCACCAAAGCCTATCCGTACCACTCCAAACCTTGTTAGTCGTCTTGAGGATCTACCTCTGCCATGGACACGGTCCCCTACAAAAGCTCAAATGG AACCTGTTGTAGCCACTTGGCATTTCATATCGAGTGATCCTCTCCATTCTGGTCAGTCTGCTGCTGTAGACTTCTCTCTTGAAGCAACCACAGATTCCCC CTCTTTCAGGAACACAATGAAGCTTGCTCCAATGCCTGACTCATATGATTTGGACAGAGGATTGCTTCTTGCTGTTCAAGCGATACAGGCTTTACTGGAG AATAAGGGTACCCCAATCATTGTTGGAATTGGTGGTCCCCGTGGGTCTGGAAAAACTAGTTTGGCTCATAAAATGGCGAATATTGTTGGATGTGAAGTAG TATCGCTTGAAAGCTATTTCATACCTGAACAAGTGAAAGATTTTAAGTATGATGATTTTAACTGTCTTGATGTACCTTTGCTTTTGAAGAATATCGATGA TGTAAGCAATGGACGGAAAACAACGGTACCTATATTTGACTTGGAGACTGGTGCTCGTAGTGGATTCAAAGAACTTGAAGTATCTGAAGATTGTGGCGTG ATCATATTTGAAGGTGTCTATGCTTTGCATCCTGAGATTCGGAACTTGCTCGACCTGTGGATTGCTGTTGTTGGGGGCGTCCATTCGCATCTCATTTCTC GAGTTCAAAGGGACAAAAGCAGAGTTGGTTGTTTTGTGTCCCAAAATGAGATTATGATGGGAGTGTTTCCAATGTTCCAGCAGTATATCGAACCTCATCT TGTTCATGCACATCTCAAAATAAGGAATGATTTTGACCCTGTTCTTTCACCAGAGAGCTCGTTGTTTGTTCTGAAGAGTAATAAGCAAGTCAGTTACCAG GATATTATGAAAGTGCTGGATCCTGCAAAGCTCTTCAGTTCAATTCAGAGTTTCATTGATATATATCTAAAGCTTCCTGGGATTTCAAGTAACGGTATGC TGACTGAGGGTGAATGCATACGTGTTAGAATTTGTGAAGGAAGATTTGCAGTCTTGATACGAGAGCCTATAAGAGAAGGAAATTTCATCATCCAACCCAA AGTTGATTTTGATATTAGCATTAGTACGGTTGCTGGACTTCTCAATCTTGGGTACCAGGCAGTGGCTTATATTGAAGCATCTGCATTTATCTACCAAGAT GGAAAGATTCTTATCGAGGTCGATCACCTGCAAGATGCTCCTAGTCCTTACTTACAGATCAAAGGGGTTGACAAAGAGGTGGTGGCTGCTGCTGGCTCAA CACTTAACCTAGATGGTTCATATACTACTAAGAGTTATCTGCAAATTGTCCTGGAAAATCTACCAGCAGAGGATCAAAGCTCCAATGGTGTCCACAGTCA CCAAGCTTCAAGACTGCAGGAACTAGTTGAATTTATACAGACTCAGGGAAGCAATACCAGTACAGCTTCAGAATCGTCCCCATGCAGAGAGGTAACAGTT CCAATTGAAGTCGTAATTGAAGAAATGCAGTCCAGGATCAAACGGCTGGAAAGGTGGCACATTATTAACACGGTTCTATGGACGTTCTTGATGTCTGCCC TTGTCGGGTACTCGCTTTACCAGAAGAAGCGACAATGA
AA sequence Show only first row Show all	>Lus10025598 pacid=23144959 polypeptide=Lus10025598 locus=Lus10025598.g ID=Lus10025598.BGIv1.0 annot-version=v1.0 MDDEVVQRVLQEGGRDFLKQSPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKGGVVIVGIGGPSGSGKTRNGVDDSNDADSIDFDALVRNLED LMQGKDTFIPLFDYQQKKRAGSKLIKSVSSGVVIVDGTYALHTRLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQ IRINNSFVSSFREAIYKLKCRSESSGGSAYAFQGTETQMDHFIEMYLRPPAASEEARVNDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTL GGLLALGYNVVVSYKRASTSVTNGFLSISLETIDTLNETFFVLRGTNRKAVGAEALKIGISGPWITKSYLEMILERKGVPRLNTPPLISATPTTSGEEGT IAAPKPIRTTPNLVSRLEDLPLPWTRSPTKAQMEPVVATWHFISSDPLHSGQSAAVDFSLEATTDSPSFRNTMKLAPMPDSYDLDRGLLLAVQAIQALLE NKGTPIIVGIGGPRGSGKTSLAHKMANIVGCEVVSLESYFIPEQVKDFKYDDFNCLDVPLLLKNIDDVSNGRKTTVPIFDLETGARSGFKELEVSEDCGV IIFEGVYALHPEIRNLLDLWIAVVGGVHSHLISRVQRDKSRVGCFVSQNEIMMGVFPMFQQYIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVSYQ DIMKVLDPAKLFSSIQSFIDIYLKLPGISSNGMLTEGECIRVRICEGRFAVLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQD GKILIEVDHLQDAPSPYLQIKGVDKEVVAAAGSTLNLDGSYTTKSYLQIVLENLPAEDQSSNGVHSHQASRLQELVEFIQTQGSNTSTASESSPCREVTV PIEVVIEEMQSRIKRLERWHIINTVLWTFLMSALVGYSLYQKKRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	0	1
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	1.0	0.9703
AT5G66810			unknown protein		Lus10022461 [exp]	2.2	0.9289
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	2.8	0.9375
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	3.5	0.9334
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	4.0	0.9296
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	4.9	0.9166
AT5G66810			unknown protein		Lus10016766 [exp]	5.1	0.9159
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	5.9	0.9282
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10006528 [exp]	8.1	0.9083
AT3G15160			unknown protein		Lus10019614 [exp]	8.4	0.8797

Compare expression of checked genes

Lus10025598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.