Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59660 724 / 0 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G03370 86 / 2e-17 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 75 / 7e-14 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G02120 64 / 1e-10 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT5G04220 54 / 1e-07 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 49 / 8e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G37740 49 / 9e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G07940 51 / 1e-06 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G11100 51 / 2e-06 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G18370 51 / 2e-06 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027067 [exp] 1034 / 0 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10001915 [exp] 117 / 5e-27 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 86 / 3e-17 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 81 / 2e-15 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 76 / 4e-14 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10028209 [exp] 66 / 8e-11 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10042913 [exp] 62 / 1e-09 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10008055 [exp] 53 / 7e-07 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026515 [exp] 52 / 1e-06 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127000 [exp] 797 / 0 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.006G003200 [exp] 105 / 2e-23 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.015G083500 [exp] 105 / 3e-23 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 101 / 4e-22 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.014G047600 [exp] 68 / 1e-11 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.010G110900 [exp] 56 / 6e-09 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G137800 [exp] 57 / 1e-08 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.012G056000 [exp] 58 / 2e-08 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.015G046700 [exp] 56 / 4e-08 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.008G131500 [exp] 54 / 4e-08 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10025600 pacid=23145088 polypeptide=Lus10025600 locus=Lus10025600.g ID=Lus10025600.BGIv1.0 annot-version=v1.0 ATGATGGCGATGATGGTCTGGGAGGCAGCGTTGGTGTTTCTGGTCCCGTCGTGGTGGGAGATCAAAGTCGCTGTGGCCGCCGCCGTGTTCTTGGCCTCTG CCTACTGGTTCTTTGCTCACTGCGGAGGAACCAGTCTCGATTCTCGTGATGCCTTTCCTGAGAGCTTGGGTGACAACGGAGATGGCTTTGAGATCAACGA TAAGAATGGCCCTCTGAAAGCTGATGCACAAGCCGGTTCTGGGTATCTGATCAAGGTGGAATTGTTGGCTGCTAAGAATCTAATAGGTGCAAATTTGAAT GGCACGTCAGATCCTTATGCTCTTATTGCTTGCGGTTCTGAGAAGAGATTCAGCTCAATGGTCCCCAGTTCACGAAATCCCATGTGGGGTGAAGAATTCA ATTTTTCTGTTGATGAGCTACCTGTTCAGATTAATGTGTCGATATATGACTGGGATATAATTTGGAAAAGTACTGTTCTTGGTTCTGTAACTGTTCCAGT TGAAAGTGAAGGGCAAACTGGTGCCTTATGGTACACGTTGGATAGCCAATCTGGGCAGGTTTGTCTTCACATAAAGACTATAAGGATTGCTGGAAATTCT TTGAGAAATAGAGATGCATACTCTATACCTATTGCTAGAAGTTGTTCCAGTGGTAGTTTGCATTCCAAGGGGGCAGAACATAGCTATTCATGTGCACTTG AGAGATCGTTCCTGTATCATGGACGCATGTACGTCTCTGCATGGCACATTTGCTTCCACTCAAATGTCTTTTCTAAGCAAATGAAGGTGGTCATACCATT TGGAGATATTGATGAGATACGTAGGAGTCAGCATGCTTTTATAAATCCTGCGATAACCATTATCCTGCGGATGGGAGCTGGTGGGCACGGTGTGCCTCCT CTTGGAAGCCCAGATGGTAGAGTGAGATATAAATTTGCATCATTTTGGAACAGGAATCATGCTATAAGAATACTGCAGCGTTTTGCGAAGAATCACCATG CAATGCTAGAAGCTGAGAAGAAGGAAAGTGCGGAATCAGCATTGCGGGCACACAGTAGCTCTGTCAGAGTAAGAAAAGGCGAATCCTCGTCTCTTCAAAG CAGTATAGTGAAAGCTCAGAAAGTTCAACCGTTTATCAAAGAAGAGGTTCTTATGGGCATACGTAATGAAATATTTCCTTGCACGGCTGAGCAGTTCCTA AATCTATTGTTGAGCGATGATTCTACCTTTTTAAATGACTATCGGTCAGTTAGAAAGGATACAAATTTAAATATTGGACCATGGCATCCAGCAGATGAAT ATGATGGTCAAGTAAGAGAATTAACTTTCAGATCCGTATGTAATAGTCCTATGTGCCCTCCAGATACAGCCATGACAGAGTATCAGCATTTTGTTTTATC GCCGGATAAGAAATTCCTGGTATTTGAAACAGTGCAACAGGCTCACGATGTGCCTTTTGGATCTTATTTTGAGATTCATGGTCGCTGGAAAATTGAGACT AATGCTGAAAGCTCTTCCACTATCGATGTTAAAGTGGGAGCGCATTTCAAGAAATGGTGTGTGATGCAGTCGAAAATCAAGACAGGAGCTGTGAATGAGT ACAAGAAAGAGGTGGAACTTATGCTGGACGTGGCTCGCTCGTACATTGCCTCGCGTAACAGAGAGACCAACAATCAGCAATCTTCTCCCCTATCCACTGT AACACAGGATGGCAACTGA
AA sequence Show only first row Show all	>Lus10025600 pacid=23145088 polypeptide=Lus10025600 locus=Lus10025600.g ID=Lus10025600.BGIv1.0 annot-version=v1.0 MMAMMVWEAALVFLVPSWWEIKVAVAAAVFLASAYWFFAHCGGTSLDSRDAFPESLGDNGDGFEINDKNGPLKADAQAGSGYLIKVELLAAKNLIGANLN GTSDPYALIACGSEKRFSSMVPSSRNPMWGEEFNFSVDELPVQINVSIYDWDIIWKSTVLGSVTVPVESEGQTGALWYTLDSQSGQVCLHIKTIRIAGNS LRNRDAYSIPIARSCSSGSLHSKGAEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAITIILRMGAGGHGVPP LGSPDGRVRYKFASFWNRNHAIRILQRFAKNHHAMLEAEKKESAESALRAHSSSVRVRKGESSSLQSSIVKAQKVQPFIKEEVLMGIRNEIFPCTAEQFL NLLLSDDSTFLNDYRSVRKDTNLNIGPWHPADEYDGQVRELTFRSVCNSPMCPPDTAMTEYQHFVLSPDKKFLVFETVQQAHDVPFGSYFEIHGRWKIET NAESSSTIDVKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLDVARSYIASRNRETNNQQSSPLSTVTQDGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	1.7	0.9600
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	2.2	0.9392
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	2.4	0.9487
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	6.5	0.9426
AT5G55060			unknown protein		Lus10040061 [exp]	8.2	0.9406
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	8.8	0.9075
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	9.2	0.9055
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	9.4	0.9304
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	11.2	0.9220
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	12.4	0.9386

Compare expression of checked genes

Lus10025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.