Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65260 378 / 1e-131 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027068 [exp] 463 / 3e-165 AT1G65260 308 / 5e-104 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099400 [exp] 435 / 7e-154 AT1G65260 390 / 4e-136 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1) Potri.006G123600 [exp] 434 / 2e-153 AT1G65260 424 / 1e-149 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF04012 [flax] [poplar] PspA_IM30 PspA/IM30 family
Representative CDS sequence Show only first row Show all	>Lus10025601 pacid=23144967 polypeptide=Lus10025601 locus=Lus10025601.g ID=Lus10025601.BGIv1.0 annot-version=v1.0 ATGGCGCTGAATTCACAGACAATTTCTGGATTGGCCTTGCACTTACCATCTCCTGCTTCAACTTCATCGACTTCCTCGAGTAACACTCTCTGTATGGTGA AGCGCCCGCCTCTCTGCTCGTCCTTCTTAAATTGCGGAGCTCTAAAGATGGATAGGATACGGAGTCCTGTTGGTTATTCACGTCGTATGAGGCAAGGCAG AGGAGCTCTAGTTATCCGTATGAATCTCTTTGAACGGTTTGCTAGAGTTGTGAAGTCTTATGGAAATGCAATCTTGAGTTCCTTTGAAGACCCGGAGAAG ATTTTAGATCAAGCGGTGCTTGAAATGAATGACGACTTGACAAAGATGCGCCAAGCCACAGCACAAGTGTTGGCAACTCAAAAACGTATGGAGAATAAGT ACAAAGCTGCTCAACAAGCTTCTGAAGAGTGGTACCGGAAGGCGCAACTTGCTCTTGGAAAGGGAGAGGAAGATCTTGCACGCGAAGCACTCAAGCGGCG TAAATCTTATGCTGATAGTGCTAGCTCCTTGAAAGCAAACCTAGATCAACAGAAAAGTGTGGTGGACAATCTTATCTCTAACACTCGGCTCTTGGAGAGC AAGATACAAGAGGCAAAGTCAAAGAAGGACACTCTTAAAGCAAGGGCTCAGAGTGCAAGGACGGCAACCAAAGTGAATGAGATGGTAGGAAATGTCAATA CCAGCAGTGCTCTTTCAGCTTTTGAAAAGATGGAGGAAAAAGTGATGACAATGGAATCCGAGGCAGAAGCTCTTGGGCAGCTGACTTCTGATGAGTTGGA TGGGAAGTTTTTGGCTCTGGAGACGTCATCAGTGGATGATGATCTAGATCAGTTGAAGAAGCAGCTAGCCGGTAGCAGCACAAAGAAACAGTTGCCCCCG GGGCAAAGCCTTTTCAGCAGCACAAGAGATCCGGATATTGAGTCGGAGCTGAATGAATTGCGGCAAAAGAGGAAGGAATTTTGA
AA sequence Show only first row Show all	>Lus10025601 pacid=23144967 polypeptide=Lus10025601 locus=Lus10025601.g ID=Lus10025601.BGIv1.0 annot-version=v1.0 MALNSQTISGLALHLPSPASTSSTSSSNTLCMVKRPPLCSSFLNCGALKMDRIRSPVGYSRRMRQGRGALVIRMNLFERFARVVKSYGNAILSSFEDPEK ILDQAVLEMNDDLTKMRQATAQVLATQKRMENKYKAAQQASEEWYRKAQLALGKGEEDLAREALKRRKSYADSASSLKANLDQQKSVVDNLISNTRLLES KIQEAKSKKDTLKARAQSARTATKVNEMVGNVNTSSALSAFEKMEEKVMTMESEAEALGQLTSDELDGKFLALETSSVDDDLDQLKKQLAGSSTKKQLPP GQSLFSSTRDPDIESELNELRQKRKEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	0	1
AT3G10405			unknown protein		Lus10037959 [exp]	1.0	0.9618
AT1G67700			unknown protein		Lus10006442 [exp]	8.0	0.9494
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	8.9	0.9388
AT1G67700			unknown protein		Lus10011383 [exp]	11.0	0.9490
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	12.8	0.9366
AT1G22630			unknown protein		Lus10018614 [exp]	15.0	0.9298
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	17.0	0.9094
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	17.5	0.9313
AT2G38570			unknown protein		Lus10014180 [exp]	18.2	0.9111
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	21.2	0.9270

Compare expression of checked genes

Lus10025601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.